RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 CDAN1Q8IWY9 1227 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 ANKRD13AQ8IZ07 590 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 TBC1D22AQ8WUA7 517 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 TEPSINQ96N21 525 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 TMEM39BQ9GZU3 492 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 HPS5Q9UPZ3 1129 aa16.63■□□□□ 0.25
CPSF4-210ENST00000469897 CASP8AP2Q9UKL3 1982 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 FKTNO75072 461 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 ALDH1A1P00352 501 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 ZBTB48P10074 688 aaPredicted RBP16.62■□□□□ 0.25
CPSF4-210ENST00000469897 GJA5P36382 358 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 CACNB3P54284 484 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 PUM3Q15397 648 aaKnown RBP16.62■□□□□ 0.25
CPSF4-210ENST00000469897 PKN2Q16513 984 aaKnown RBP16.62■□□□□ 0.25
CPSF4-210ENST00000469897 CFHR5Q9BXR6 569 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 SSC5DA1L4H1 1573 aa16.62■□□□□ 0.25
CPSF4-210ENST00000469897 ZNF646O15015 1829 aaPredicted RBP16.61■□□□□ 0.25
CPSF4-210ENST00000469897 IGF2BP3O00425 579 aaKnown RBP eCLIP16.61■□□□□ 0.25
CPSF4-210ENST00000469897 UBTFL1P0CB47 393 aaPredicted RBP16.61■□□□□ 0.25
CPSF4-210ENST00000469897 TNNI2P48788 182 aa16.61■□□□□ 0.25
CPSF4-210ENST00000469897 HDLBPQ00341 1268 aaKnown RBP16.61■□□□□ 0.25
CPSF4-210ENST00000469897 NOM1Q5C9Z4 860 aaKnown RBP16.61■□□□□ 0.25
CPSF4-210ENST00000469897 ATG9AQ7Z3C6 839 aa16.61■□□□□ 0.25
CPSF4-210ENST00000469897 TEKT1Q969V4 418 aa16.61■□□□□ 0.25
CPSF4-210ENST00000469897 MRIQ9BWK5 157 aa16.61■□□□□ 0.25
CPSF4-210ENST00000469897 ELP3Q9H9T3 547 aa16.61■□□□□ 0.25
CPSF4-210ENST00000469897 LPIN2Q92539 896 aa16.6■□□□□ 0.25
CPSF4-210ENST00000469897 SIL1Q9H173 461 aa16.6■□□□□ 0.25
CPSF4-210ENST00000469897 CT47B1P0C2W7 299 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-210ENST00000469897 SLC5A1P13866 664 aa16.59■□□□□ 0.25
CPSF4-210ENST00000469897 MAP3K9P80192 1104 aa16.59■□□□□ 0.25
CPSF4-210ENST00000469897 APOBEC3HQ6NTF7 200 aaKnown RBP16.59■□□□□ 0.25
CPSF4-210ENST00000469897 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-210ENST00000469897 OPTNQ96CV9 577 aa16.59■□□□□ 0.25
CPSF4-210ENST00000469897 ZDHHC15Q96MV8 337 aa16.59■□□□□ 0.25
CPSF4-210ENST00000469897 PTPN18Q99952 460 aa16.59■□□□□ 0.25
CPSF4-210ENST00000469897 API5Q9BZZ5 524 aaKnown RBP16.59■□□□□ 0.25
CPSF4-210ENST00000469897 CCER2I3L3R5 266 aa16.58■□□□□ 0.24
CPSF4-210ENST00000469897 CNKSR2Q8WXI2 1034 aa16.58■□□□□ 0.24
CPSF4-210ENST00000469897 CEP126Q9P2H0 1117 aa16.58■□□□□ 0.24
CPSF4-210ENST00000469897 LRRFIP2Q9Y608 721 aaKnown RBP16.58■□□□□ 0.24
CPSF4-210ENST00000469897 CACNA1FO60840 1977 aa16.57■□□□□ 0.24
CPSF4-210ENST00000469897 KIF16BQ96L93 1317 aa16.57■□□□□ 0.24
CPSF4-210ENST00000469897 RARSP54136 660 aaKnown RBP16.57■□□□□ 0.24
CPSF4-210ENST00000469897 OTUD7BQ6GQQ9 843 aa16.57■□□□□ 0.24
CPSF4-210ENST00000469897 WDR66Q8TBY9 1149 aa16.57■□□□□ 0.24
CPSF4-210ENST00000469897 PA2G4Q9UQ80 394 aaKnown RBP16.57■□□□□ 0.24
CPSF4-210ENST00000469897 SUGT1Q9Y2Z0 365 aa16.57■□□□□ 0.24
CPSF4-210ENST00000469897 TESPA1A2RU30 521 aaPredicted RBP16.56■□□□□ 0.24
CPSF4-210ENST00000469897 CIAO1O76071 339 aa16.56■□□□□ 0.24
CPSF4-210ENST00000469897 VGLL4Q14135 290 aa16.56■□□□□ 0.24
CPSF4-210ENST00000469897 FBXO46Q6PJ61 603 aaPredicted RBP16.56■□□□□ 0.24
CPSF4-210ENST00000469897 HHIPL2Q6UWX4 724 aa16.56■□□□□ 0.24
CPSF4-210ENST00000469897 MS4A4AQ96JQ5 239 aa16.56■□□□□ 0.24
CPSF4-210ENST00000469897 TMOD2Q9NZR1 351 aa16.56■□□□□ 0.24
CPSF4-210ENST00000469897 CRHR2Q13324 411 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 ATP2B3Q16720 1220 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.55■□□□□ 0.24
CPSF4-210ENST00000469897 MEIS3Q99687 375 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 FBXO3Q9UK99 471 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 HDAC5Q9UQL6 1122 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 TRIM17Q9Y577 477 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 CSADQ9Y600 493 aa16.55■□□□□ 0.24
CPSF4-210ENST00000469897 MAST3O60307 1309 aa16.54■□□□□ 0.24
CPSF4-210ENST00000469897 IL15P40933 162 aaPredicted RBP16.54■□□□□ 0.24
CPSF4-210ENST00000469897 MIGA2Q7L4E1 593 aa16.54■□□□□ 0.24
CPSF4-210ENST00000469897 FAM83AQ86UY5 434 aa16.54■□□□□ 0.24
CPSF4-210ENST00000469897 OTUD5Q96G74 571 aa16.54■□□□□ 0.24
CPSF4-210ENST00000469897 GNL3LQ9NVN8 582 aaKnown RBP16.54■□□□□ 0.24
CPSF4-210ENST00000469897 CCL15-CCL14A0A0B4J2E2 113 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 TIMM10P62072 90 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 DIXDC1Q155Q3 683 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 CCL15Q16663 113 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 FKBP1CQ5VVH2 108 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 INTS3Q68E01 1043 aaKnown RBP16.53■□□□□ 0.24
CPSF4-210ENST00000469897 OTOP1Q7RTM1 612 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 BRI3BPQ8WY22 251 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 ARHGAP45Q92619 1136 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 ZKSCAN4Q969J2 545 aaPredicted RBP16.53■□□□□ 0.24
CPSF4-210ENST00000469897 COPRSQ9NQ92 184 aa16.53■□□□□ 0.24
CPSF4-210ENST00000469897 PRDX5P30044 214 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 ADORA1P30542 326 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 PHKA1P46020 1223 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 GTF2A2P52657 109 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 CDC42EP5Q6NZY7 148 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 CD99L2Q8TCZ2 262 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 FAM151AQ8WW52 585 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 WRNIP1Q96S55 665 aa16.52■□□□□ 0.24
CPSF4-210ENST00000469897 LDHBP07195 334 aaKnown RBP16.51■□□□□ 0.23
CPSF4-210ENST00000469897 SP3Q02447 781 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 TCP10Q12799 353 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 CCDC102BQ68D86 513 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 FAM43AQ8N2R8 423 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 HOOK2Q96ED9 719 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 ERO1AQ96HE7 468 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 USP40Q9NVE5 1235 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 DENND2AQ9ULE3 1009 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 DAGLAQ9Y4D2 1042 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 SNCAIPQ9Y6H5 919 aa16.51■□□□□ 0.23
CPSF4-210ENST00000469897 SPDYE5A6NIY4 337 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms