RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 NAPGQ99747 312 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 IBTKQ9P2D0 1353 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 ARHGAP6O43182 974 aa21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 NLRP12P59046 1061 aa21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 MSL1Q68DK7 614 aa21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 TBCAO75347 108 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 TFCP2Q12800 502 aa21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 ABCC10Q5T3U5 1492 aa21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 CYP7A1P22680 504 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 TTC14Q96N46 770 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 ADGBQ8N7X0 1667 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 YTHDC2Q9H6S0 1430 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 PTPRTO14522 1441 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 TNNC1P63316 161 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 KRBA2Q6ZNG9 492 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 MLKLQ8NB16 471 aa21.48■■□□□ 1.03
CCDC88B-204ENST00000463837 RFC4P35249 363 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 ELF2Q15723 593 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 TRPM2O94759 1503 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 KDM5AP29375 1690 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 CHMP4BP1P59074 171 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 AFAP1L1Q8TED9 768 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 CCDC77Q9BR77 488 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 CUTAO60888 179 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 TTLL12Q14166 644 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 RBM28Q9NW13 759 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 DNAJC21Q5F1R6 531 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 BICC1Q9H694 974 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 BCL2L12Q9HB09 334 aa21.47■■□□□ 1.03
CCDC88B-204ENST00000463837 B4GALNT4Q76KP1 1039 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 TMEM87BQ96K49 555 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 MMRN2Q9H8L6 949 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 KIF4AO95239 1232 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 G2E3Q7L622 706 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 NEK11Q8NG66 645 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 ZRANB1Q9UGI0 708 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 CYP26C1Q6V0L0 522 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 EYA1Q99502 592 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 STAMBPO95630 424 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 CWF19L2Q2TBE0 894 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 IGSF22Q8N9C0 903 aa21.46■■□□□ 1.03
CCDC88B-204ENST00000463837 CCDC122Q5T0U0 273 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 ZEB2O60315 1214 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 CTNNA2P26232 953 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 SLC4A8Q2Y0W8 1093 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 CFAP58Q5T655 872 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 KCNH3Q9ULD8 1083 aa21.45■■□□□ 1.02
CCDC88B-204ENST00000463837 DDX21Q9NR30 783 aaKnown RBP eCLIP21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 TRAF1Q13077 416 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 SCLT1Q96NL6 688 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 CARD6Q9BX69 1037 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 FAM173BQ6P4H8 233 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 FMNL3Q8IVF7 1028 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 C6orf50Q9HD87 102 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 CABP5Q9NP86 173 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 CEP57Q86XR8 500 aa21.44■■□□□ 1.02
CCDC88B-204ENST00000463837 ST5P78524 1137 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 SYCP3Q8IZU3 236 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 TSPY3P0CV98 308 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 TSPY8P0CW00 308 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 GSPT1P15170 499 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 SAMD9Q5K651 1589 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 HLA-DOAP06340 250 aa21.43■■□□□ 1.02
CCDC88B-204ENST00000463837 POTEDQ86YR6 584 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 TMTC1Q8IUR5 882 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 RGS12O14924 1447 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 FAM135BQ49AJ0 1406 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 NEBLO76041 1014 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 USP37Q86T82 979 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 KDM5CP41229 1560 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 ZCRB1Q8TBF4 217 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 WDR78Q5VTH9 848 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 A0A1W2PRG0 241 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 TNNI3KQ59H18 835 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 DTHD1Q6ZMT9 781 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 CDC37L1Q7L3B6 337 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 FPGT-TNNI3KV9GXZ4 949 aa21.42■■□□□ 1.02
CCDC88B-204ENST00000463837 DEXIO95424 95 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 CHRNA2Q15822 529 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 HEATR3Q7Z4Q2 680 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 FBF1Q8TES7 1133 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 SBNO1A3KN83 1393 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 MAGEB6P1A0A0J9YX57 407 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 ZNF202O95125 648 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 NBPF6Q5VWK0 638 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 NBPF5PQ86XG9 351 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 TSC1Q92574 1164 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 NBPF4Q96M43 638 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 IRX3P78415 501 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 MKRN1Q9UHC7 482 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 STX8Q9UNK0 236 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 SBNO2Q9Y2G9 1366 aa21.41■■□□□ 1.02
CCDC88B-204ENST00000463837 KRT79Q5XKE5 535 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 CCDC114Q96M63 670 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 NUP58Q9BVL2 599 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 UBAP1LF5GYI3 381 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 NAPAP54920 295 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 ZNF219Q9P2Y4 722 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 CPLX4Q7Z7G2 160 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 GPR161Q8N6U8 529 aaKnown RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms