RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SERPINA10Q9UK55 444 aa14.53□□□□□ -0.08
USP4-204ENST00000416417 RFX5P48382 616 aaPredicted RBP14.52□□□□□ -0.08
USP4-204ENST00000416417 CAVIN4Q5BKX8 364 aa14.52□□□□□ -0.08
USP4-204ENST00000416417 IFNL1Q8IU54 200 aa14.52□□□□□ -0.08
USP4-204ENST00000416417 TEPSINQ96N21 525 aa14.52□□□□□ -0.08
USP4-204ENST00000416417 TNRC18O15417 2968 aaPredicted RBP14.52□□□□□ -0.09
USP4-204ENST00000416417 MANSC4A6NHS7 340 aaPredicted RBP14.51□□□□□ -0.09
USP4-204ENST00000416417 FKTNO75072 461 aa14.51□□□□□ -0.09
USP4-204ENST00000416417 IREB2P48200 963 aaKnown RBP14.51□□□□□ -0.09
USP4-204ENST00000416417 SIL1Q9H173 461 aa14.51□□□□□ -0.09
USP4-204ENST00000416417 FGFR2P21802 821 aa14.51□□□□□ -0.09
USP4-204ENST00000416417 NOB1Q9ULX3 412 aaKnown RBP14.51□□□□□ -0.09
USP4-204ENST00000416417 PUM3Q15397 648 aaKnown RBP14.5□□□□□ -0.09
USP4-204ENST00000416417 ALDH1L2Q3SY69 923 aa14.5□□□□□ -0.09
USP4-204ENST00000416417 ANKRD13AQ8IZ07 590 aa14.5□□□□□ -0.09
USP4-204ENST00000416417 ARAP2Q8WZ64 1704 aa14.5□□□□□ -0.09
USP4-204ENST00000416417 PTPN18Q99952 460 aa14.5□□□□□ -0.09
USP4-204ENST00000416417 EYA2O00167 538 aa14.49□□□□□ -0.09
USP4-204ENST00000416417 IFIT1P09914 478 aaKnown RBP14.49□□□□□ -0.09
USP4-204ENST00000416417 ZBTB48P10074 688 aaPredicted RBP14.49□□□□□ -0.09
USP4-204ENST00000416417 TNFAIP1Q13829 316 aa14.49□□□□□ -0.09
USP4-204ENST00000416417 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.49□□□□□ -0.09
USP4-204ENST00000416417 ATG9AQ7Z3C6 839 aa14.49□□□□□ -0.09
USP4-204ENST00000416417 TRMT2AQ8IZ69 625 aaKnown RBP14.49□□□□□ -0.09
USP4-204ENST00000416417 OPTNQ96CV9 577 aa14.49□□□□□ -0.09
USP4-204ENST00000416417 OTOFQ9HC10 1997 aa14.48□□□□□ -0.09
USP4-204ENST00000416417 TEKT1Q969V4 418 aa14.48□□□□□ -0.09
USP4-204ENST00000416417 PA2G4Q9UQ80 394 aaKnown RBP14.48□□□□□ -0.09
USP4-204ENST00000416417 ALDH1A1P00352 501 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 UBTFL1P0CB47 393 aaPredicted RBP14.47□□□□□ -0.09
USP4-204ENST00000416417 SLC5A1P13866 664 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 CAP1Q01518 475 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 CRHR2Q13324 411 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 VGLL4Q14135 290 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 TBC1D22AQ8WUA7 517 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 CFHR5Q9BXR6 569 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 TRIM17Q9Y577 477 aa14.47□□□□□ -0.09
USP4-204ENST00000416417 LRRFIP2Q9Y608 721 aaKnown RBP14.47□□□□□ -0.09
USP4-204ENST00000416417 TNNI2P48788 182 aa14.46□□□□□ -0.09
USP4-204ENST00000416417 INHBEP58166 350 aa14.46□□□□□ -0.09
USP4-204ENST00000416417 PKN2Q16513 984 aaKnown RBP14.46□□□□□ -0.09
USP4-204ENST00000416417 NOM1Q5C9Z4 860 aaKnown RBP14.46□□□□□ -0.09
USP4-204ENST00000416417 APOBEC3HQ6NTF7 200 aaKnown RBP14.46□□□□□ -0.09
USP4-204ENST00000416417 FBXO46Q6PJ61 603 aaPredicted RBP14.46□□□□□ -0.09
USP4-204ENST00000416417 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP4-204ENST00000416417 CD99L2Q8TCZ2 262 aa14.46□□□□□ -0.09
USP4-204ENST00000416417 OTUD5Q96G74 571 aa14.46□□□□□ -0.09
USP4-204ENST00000416417 MAP3K9P80192 1104 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 DIXDC1Q155Q3 683 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 BRI3BPQ8WY22 251 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 LPIN2Q92539 896 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 ZKSCAN4Q969J2 545 aaPredicted RBP14.46□□□□□ -0.1
USP4-204ENST00000416417 MS4A4AQ96JQ5 239 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 ZDHHC15Q96MV8 337 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 MEIS3Q99687 375 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 TNNQ9UQP3 1299 aa14.46□□□□□ -0.1
USP4-204ENST00000416417 ADORA1P30542 326 aa14.45□□□□□ -0.1
USP4-204ENST00000416417 HDLBPQ00341 1268 aaKnown RBP14.45□□□□□ -0.1
USP4-204ENST00000416417 ATP2B3Q16720 1220 aa14.45□□□□□ -0.1
USP4-204ENST00000416417 MIGA2Q7L4E1 593 aa14.45□□□□□ -0.1
USP4-204ENST00000416417 OTOP1Q7RTM1 612 aa14.45□□□□□ -0.1
USP4-204ENST00000416417 UNCXA6NJT0 531 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 PRDX5P30044 214 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 PHKA1P46020 1223 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 TCP10Q12799 353 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 TMOD2Q9NZR1 351 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 CEP126Q9P2H0 1117 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 CSADQ9Y600 493 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 SNCAIPQ9Y6H5 919 aa14.44□□□□□ -0.1
USP4-204ENST00000416417 CCL15-CCL14A0A0B4J2E2 113 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 TESPA1A2RU30 521 aaPredicted RBP14.43□□□□□ -0.1
USP4-204ENST00000416417 RARSP54136 660 aaKnown RBP14.43□□□□□ -0.1
USP4-204ENST00000416417 CCL15Q16663 113 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 FAM43AQ8N2R8 423 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 WRNIP1Q96S55 665 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 API5Q9BZZ5 524 aaKnown RBP14.43□□□□□ -0.1
USP4-204ENST00000416417 DAGLAQ9Y4D2 1042 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 KIF16BQ96L93 1317 aa14.43□□□□□ -0.1
USP4-204ENST00000416417 ECM2O94769 699 aaPredicted RBP14.42□□□□□ -0.1
USP4-204ENST00000416417 OTUD7BQ6GQQ9 843 aa14.42□□□□□ -0.1
USP4-204ENST00000416417 CDC42EP5Q6NZY7 148 aa14.42□□□□□ -0.1
USP4-204ENST00000416417 HHIPL2Q6UWX4 724 aa14.42□□□□□ -0.1
USP4-204ENST00000416417 WDR66Q8TBY9 1149 aa14.42□□□□□ -0.1
USP4-204ENST00000416417 MAST3O60307 1309 aa14.42□□□□□ -0.1
USP4-204ENST00000416417 CIAO1O76071 339 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 INPP5BP32019 993 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 TIMM10P62072 90 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 NFIAQ12857 509 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 TAF1CQ15572 869 aaPredicted RBP14.41□□□□□ -0.1
USP4-204ENST00000416417 MRIQ9BWK5 157 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.41□□□□□ -0.1
USP4-204ENST00000416417 HTTP42858 3142 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 LAMB1P07942 1786 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 GTF2A2P52657 109 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 SP3Q02447 781 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 FAM83AQ86UY5 434 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 ZFPM1Q8IX07 1006 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 ERO1AQ96HE7 468 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 SUGT1Q9Y2Z0 365 aa14.41□□□□□ -0.1
USP4-204ENST00000416417 POTEFA5A3E0 1075 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms