RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 PITPNM2Q9BZ72 1349 aa24.33■■□□□ 1.49
PDLIM2-207ENST00000409417 HDAC1Q13547 482 aaPredicted RBP24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 TRAF5O00463 557 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 LDHBP07195 334 aaKnown RBP24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 IFIT2P09913 472 aaKnown RBP24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 PRDX5P30044 214 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 CRKP46108 304 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 PI16Q6UXB8 463 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 USP48Q86UV5 1035 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 SULF1Q8IWU6 871 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 TEKT1Q969V4 418 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 PRMT6Q96LA8 375 aaPredicted RBP24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 PCDHAC2Q9Y5I4 1007 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 MYH13Q9UKX3 1938 aa24.32■■□□□ 1.48
PDLIM2-207ENST00000409417 MYO1BO43795 1136 aa24.3■■□□□ 1.48
PDLIM2-207ENST00000409417 SPTY2D1Q68D10 685 aaPredicted RBP24.3■■□□□ 1.48
PDLIM2-207ENST00000409417 HHIPL2Q6UWX4 724 aa24.3■■□□□ 1.48
PDLIM2-207ENST00000409417 ABCF2Q9UG63 623 aa24.3■■□□□ 1.48
PDLIM2-207ENST00000409417 ZDHHC15Q96MV8 337 aa24.29■■□□□ 1.48
PDLIM2-207ENST00000409417 BCL11AQ9H165 835 aa24.29■■□□□ 1.48
PDLIM2-207ENST00000409417 CEP350Q5VT06 3117 aa24.29■■□□□ 1.48
PDLIM2-207ENST00000409417 SMARCA5O60264 1052 aaPredicted RBP24.28■■□□□ 1.48
PDLIM2-207ENST00000409417 IRX6P78412 446 aaPredicted RBP24.28■■□□□ 1.48
PDLIM2-207ENST00000409417 FMR1Q06787 632 aaKnown RBP eCLIP24.28■■□□□ 1.48
PDLIM2-207ENST00000409417 SNRKQ9NRH2 765 aa24.28■■□□□ 1.48
PDLIM2-207ENST00000409417 ADM5C9JUS6 153 aa24.27■■□□□ 1.48
PDLIM2-207ENST00000409417 TMEM88BA6NKF7 163 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 TBC1D9Q6ZT07 1266 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 ERICH6Q7L0X2 663 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 APOBEC3FQ8IUX4 373 aaKnown RBP24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 RWDD1Q9H446 243 aaPredicted RBP24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 CREBZFQ9NS37 354 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 POLR2AP24928 1970 aaKnown RBP24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 DIXDC1Q155Q3 683 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 APOBEC3HQ6NTF7 200 aaKnown RBP24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 DLK2Q6UY11 383 aa24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 DZIP1Q86YF9 867 aaKnown RBP24.26■■□□□ 1.47
PDLIM2-207ENST00000409417 AOX1Q06278 1338 aa24.25■■□□□ 1.47
PDLIM2-207ENST00000409417 ZAP70P43403 619 aa24.25■■□□□ 1.47
PDLIM2-207ENST00000409417 SPDYE2Q495Y8 402 aa24.25■■□□□ 1.47
PDLIM2-207ENST00000409417 CST9Q5W186 159 aa24.25■■□□□ 1.47
PDLIM2-207ENST00000409417 GCC1Q96CN9 775 aa24.25■■□□□ 1.47
PDLIM2-207ENST00000409417 CLRN2A0PK11 232 aa24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 CELF2O95319 508 aaKnown RBP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 CYP2E1P05181 493 aaPredicted RBP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 SLF2Q8IX21 1173 aa24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 TDRD3Q9H7E2 651 aaKnown RBP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 LRP2BPQ9P2M1 347 aa24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 ZNF70Q9UC06 446 aaPredicted RBP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 SCAF8Q9UPN6 1271 aaKnown RBP24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 DAGLAQ9Y4D2 1042 aa24.24■■□□□ 1.47
PDLIM2-207ENST00000409417 AKAP11Q9UKA4 1901 aa24.23■■□□□ 1.47
PDLIM2-207ENST00000409417 HTRA3P83110 453 aa24.23■■□□□ 1.47
PDLIM2-207ENST00000409417 MECOMQ03112 1051 aa24.23■■□□□ 1.47
PDLIM2-207ENST00000409417 CDCA5Q96FF9 252 aa24.22■■□□□ 1.47
PDLIM2-207ENST00000409417 FAM163AQ96GL9 167 aaPredicted RBP24.22■■□□□ 1.47
PDLIM2-207ENST00000409417 DEFB129Q9H1M3 183 aa24.22■■□□□ 1.47
PDLIM2-207ENST00000409417 VEZTQ9HBM0 779 aa24.22■■□□□ 1.47
PDLIM2-207ENST00000409417 RAI14Q9P0K7 980 aa24.22■■□□□ 1.47
PDLIM2-207ENST00000409417 IGSF3O75054 1194 aa24.21■■□□□ 1.47
PDLIM2-207ENST00000409417 ATP5JP18859 108 aa24.21■■□□□ 1.47
PDLIM2-207ENST00000409417 TNFAIP1Q13829 316 aa24.21■■□□□ 1.47
PDLIM2-207ENST00000409417 NSUN4Q96CB9 384 aaKnown RBP24.21■■□□□ 1.47
PDLIM2-207ENST00000409417 GAKO14976 1311 aa24.21■■□□□ 1.47
PDLIM2-207ENST00000409417 GSTO1P78417 241 aa24.2■■□□□ 1.47
PDLIM2-207ENST00000409417 ZNF384Q8TF68 577 aa24.2■■□□□ 1.47
PDLIM2-207ENST00000409417 ZNF408Q9H9D4 720 aa24.2■■□□□ 1.47
PDLIM2-207ENST00000409417 IGHDP01880 384 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 PIH1D3Q9NQM4 214 aaKnown RBP24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 ZBTB47Q9UFB7 747 aaPredicted RBP24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 PPP2R3BQ9Y5P8 575 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 NDUFB9Q9Y6M9 179 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 LDHCP07864 332 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 ANKRD45Q5TZF3 282 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 FKBP1CQ5VVH2 108 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 PRAMEF18Q5VWM3 479 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 SMC5Q8IY18 1101 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 ECHDC1Q9NTX5 307 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 TMOD2Q9NZR1 351 aa24.19■■□□□ 1.46
PDLIM2-207ENST00000409417 GPATCH3Q96I76 525 aa24.18■■□□□ 1.46
PDLIM2-207ENST00000409417 TRPM7Q96QT4 1865 aa24.18■■□□□ 1.46
PDLIM2-207ENST00000409417 ECM29Q5VYK3 1845 aa24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 MROH7-TTC4A0A0A0MT08 1334 aa24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 RASA3Q14644 834 aa24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 TTF1Q15361 905 aaPredicted RBP24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 CDC42EP5Q6NZY7 148 aa24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 ANTXR1Q9H6X2 564 aa24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 ABT1Q9ULW3 272 aaKnown RBP24.17■■□□□ 1.46
PDLIM2-207ENST00000409417 GPR75-ASB3A0A0A6YYF3 556 aa24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 TCP10L2B9ZVM9 353 aa24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 DNAJC5GQ8N7S2 189 aa24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 DNAJC2Q99543 621 aaKnown RBP24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 HAUS7Q99871 368 aa24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 BOLA2Q9H3K6 86 aa24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 GBA2Q9HCG7 927 aaPredicted RBP24.16■■□□□ 1.46
PDLIM2-207ENST00000409417 IDH1O75874 414 aaKnown RBP24.15■■□□□ 1.46
PDLIM2-207ENST00000409417 TNNI2P48788 182 aa24.15■■□□□ 1.46
PDLIM2-207ENST00000409417 CACNB3P54284 484 aa24.15■■□□□ 1.46
PDLIM2-207ENST00000409417 NAA16Q6N069 864 aaPredicted RBP24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms