RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 SIPA1L1O43166 1804 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 KAT6BQ8WYB5 2073 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 A0A0D9SFI3 127 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 PKP1Q13835 747 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 CRAMP1Q96RY5 1269 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 DBNDD2Q9BQY9 259 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 MRIQ9BWK5 157 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 GREM2Q9H772 168 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 IL1RAPL2Q9NP60 686 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 CTNNA3Q9UI47 895 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 PALD1Q9ULE6 856 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 SYCE3A1L190 88 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 CTIFO43310 598 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 PRPF40AO75400 957 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 AIMP1Q12904 312 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 TEX2Q8IWB9 1127 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 FAM163AQ96GL9 167 aaPredicted RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 MAP3K14Q99558 947 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 FEZ1Q99689 392 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 DIAPH3Q9NSV4 1193 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 LOC285556D6RIA3 1793 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 MAST3O60307 1309 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 STK36Q9NRP7 1315 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PTH1RQ03431 593 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 SLC20A2Q08357 652 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 ST3GAL1Q11201 340 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PPP2R5BQ15173 497 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 LRRC24Q50LG9 513 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 CCDC158Q5M9N0 1113 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 ZNF771Q7L3S4 317 aaPredicted RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 PROM2Q8N271 834 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PDCL2Q8N4E4 241 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 ANKS1AQ92625 1134 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 NSFL1CQ9UNZ2 370 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 RBM8AQ9Y5S9 174 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 PAPPA2Q9BXP8 1791 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PLIN4Q96Q06 1357 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 ATP5J2-PTCD1G3V325 749 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PFKFB2O60825 505 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 PTCD1O75127 700 aaKnown RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 MBD3O95983 291 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 MMP14P50281 582 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 UVSSAQ2YD98 709 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 SGMS1Q86VZ5 419 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 RASEFQ8IZ41 740 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 VPS33BQ9H267 617 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 LEMD3Q9Y2U8 911 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.32□□□□□ -1.4
VPS41-203ENST00000395969 FER1L6Q2WGJ9 1857 aa6.32□□□□□ -1.4
VPS41-203ENST00000395969 HSPA1LP34931 641 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 RBM6P78332 1123 aaKnown RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 GABPB1Q06547 395 aaPredicted RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 TOB2Q14106 344 aaPredicted RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 ELOA2Q8IYF1 753 aaPredicted RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 FAM117AQ9C073 453 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.31□□□□□ -1.46e-7■■■■□ 20.2
VPS41-203ENST00000395969 ZBTB3Q9H5J0 574 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 MYO3BQ8WXR4 1341 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 SBK1Q52WX2 424 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 MB21D2Q8IYB1 491 aaPredicted RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 SECISBP2LQ93073 1101 aaKnown RBP6.31□□□□□ -1.4
VPS41-203ENST00000395969 BRIP1Q9BX63 1249 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 TSPY26PQ9H489 355 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 OGFRQ9NZT2 677 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 FAM205AQ6ZU69 1335 aa6.31□□□□□ -1.4
VPS41-203ENST00000395969 CARNS1A5YM72 827 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 IL1R1P14778 569 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 ZKSCAN1P17029 563 aaPredicted RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 MCAMP43121 646 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 NAA16Q6N069 864 aaPredicted RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 CYP46A1Q9Y6A2 500 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 WDR33Q9C0J8 1336 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 HSPD1P10809 573 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 KCNJ4P48050 445 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 PPP4CP60510 307 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 SYCP1Q15431 976 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 STAG1Q8WVM7 1258 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 RTFDC1Q9BY42 306 aaPredicted RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 TRMT112Q9UI30 125 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 PTMAP06454 111 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 IFIT1P09914 478 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 U2AF2P26368 475 aaKnown RBP eCLIP6.3□□□□□ -1.41e-8■■■□□ 17.7
VPS41-203ENST00000395969 LIFRP42702 1097 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 CCDC102BQ68D86 513 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 RBM43Q6ZSC3 357 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 DHX32Q7L7V1 743 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 ZNF589Q86UQ0 364 aaPredicted RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 FAM184AQ8NB25 1140 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 GTF3C6Q969F1 213 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 NGLY1Q96IV0 654 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 FAM227BQ96M60 508 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 PUS3Q9BZE2 481 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 MKRN1Q9UHC7 482 aaKnown RBP6.3□□□□□ -1.4
VPS41-203ENST00000395969 MYH2Q9UKX2 1941 aa6.3□□□□□ -1.4
VPS41-203ENST00000395969 FAM237AA0A1B0GTK4 181 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 SLFN14P0C7P3 912 aa6.29□□□□□ -1.4
VPS41-203ENST00000395969 OS9Q13438 667 aaPredicted RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 FAM98CQ17RN3 349 aaKnown RBP6.29□□□□□ -1.4
VPS41-203ENST00000395969 SEPT12Q8IYM1 358 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms