RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 EVI5LQ96CN4 794 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 IRX2Q9BZI1 471 aaPredicted RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 QTRT2Q9H974 415 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.15□□□□□ -0.788e-8■□□□□ 10.6
RTN4-206ENST00000394611 CCT6AP40227 531 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 TIMM10P62072 90 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 SETQ01105 290 aaPredicted RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 VPS53Q5VIR6 699 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 SPATA31A1Q5TZJ5 1347 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 DDX58O95786 925 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 SYKP43405 635 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 TTC5Q8N0Z6 440 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 SMARCE1Q969G3 411 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 PGBD1Q96JS3 809 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 LSG1Q9H089 658 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 LGR6Q9HBX8 967 aa10.15□□□□□ -0.78
RTN4-206ENST00000394611 HOOK1Q9UJC3 728 aaKnown RBP10.15□□□□□ -0.78
RTN4-206ENST00000394611 SPATA31A5Q5VU36 1347 aa10.15□□□□□ -0.79
RTN4-206ENST00000394611 SPATA31A7Q8IWB4 1347 aa10.15□□□□□ -0.79
RTN4-206ENST00000394611 FAM208AQ9UK61 1670 aaKnown RBP10.15□□□□□ -0.79
RTN4-206ENST00000394611 hCG_1642624A0A1W2PR95 340 aa10.15□□□□□ -0.79
RTN4-206ENST00000394611 PRAMEF22A3QJZ6 481 aa10.15□□□□□ -0.79
RTN4-206ENST00000394611 WDHD1O75717 1129 aaPredicted RBP10.15□□□□□ -0.79
RTN4-206ENST00000394611 SMARCC1Q92922 1105 aaPredicted RBP10.15□□□□□ -0.79
RTN4-206ENST00000394611 ZEB2O60315 1214 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 PNMA6AP0CW24 399 aaPredicted RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 GSDMDP57764 484 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 VPS72Q15906 364 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 FAM98CQ17RN3 349 aaKnown RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 CMTR1Q8N1G2 835 aaKnown RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 RAPGEF4Q8WZA2 1011 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 PDE11AQ9HCR9 933 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 KDRP35968 1356 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 MEGF6O75095 1541 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 RAD21O60216 631 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 SLFN14P0C7P3 912 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 FANCCQ00597 558 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 PNOCQ13519 176 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 ERC1Q8IUD2 1116 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 PPP1R13BQ96KQ4 1090 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 CHL1O00533 1208 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 FAM160A1Q05DH4 1040 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 PHKBQ93100 1093 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 NUP88Q99567 741 aaPredicted RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 CRACR2AQ9BSW2 395 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 BICC1Q9H694 974 aaKnown RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 RGS17Q9UGC6 210 aaPredicted RBP10.14□□□□□ -0.79
RTN4-206ENST00000394611 GUCA1BQ9UMX6 200 aa10.14□□□□□ -0.79
RTN4-206ENST00000394611 RGS12O14924 1447 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 KIF5CO60282 957 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 NDUFA8P51970 172 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 TXLNBQ8N3L3 684 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 ZSCAN12O43309 604 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 EIF3JO75822 258 aaKnown RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 RNASE9P60153 205 aaKnown RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 EAF2Q96CJ1 260 aaPredicted RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 CLIC6Q96NY7 704 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 ZKSCAN3Q9BRR0 538 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 SPTLC3Q9NUV7 552 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 TRPC5Q9UL62 973 aaPredicted RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 ZPR1O75312 459 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 IL2RBP14784 551 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 TATP17735 454 aaPredicted RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 LIG3P49916 1009 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 TICAM2Q86XR7 235 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
RTN4-206ENST00000394611 PLIN2Q99541 437 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 SUGCTQ9HAC7 445 aa10.13□□□□□ -0.79
RTN4-206ENST00000394611 HGSO14964 777 aaPredicted RBP10.12□□□□□ -0.79
RTN4-206ENST00000394611 SPTLC2O15270 562 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 ERLIN1O75477 346 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 TFRCP02786 760 aaKnown RBP10.12□□□□□ -0.79
RTN4-206ENST00000394611 RPS6KB1P23443 525 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 SAFBQ15424 915 aaKnown RBP eCLIP10.12□□□□□ -0.791e-6■■□□□ 14.5
RTN4-206ENST00000394611 RGS22Q8NE09 1264 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 DBNDD2Q9BQY9 259 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 RPAP1Q9BWH6 1393 aaPredicted RBP10.12□□□□□ -0.79
RTN4-206ENST00000394611 ZBTB3Q9H5J0 574 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 NCAPD2Q15021 1401 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 PTPROQ16827 1216 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 TTC31Q49AM3 519 aaPredicted RBP10.12□□□□□ -0.79
RTN4-206ENST00000394611 CTR9Q6PD62 1173 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 KSR1Q8IVT5 923 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 AIFM3Q96NN9 605 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 BCCIPQ9P287 314 aaKnown RBP eCLIP10.12□□□□□ -0.79
RTN4-206ENST00000394611 FRMD3A2A2Y4 597 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 GRAMD1CQ8IYS0 662 aa10.12□□□□□ -0.79
RTN4-206ENST00000394611 IQSEC3Q9UPP2 1182 aaPredicted RBP10.12□□□□□ -0.79
RTN4-206ENST00000394611 A0A087WZG4 1122 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 TMEM232C9JQI7 657 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 TFCP2Q12800 502 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 NCBP3Q53F19 620 aaKnown RBP10.11□□□□□ -0.79
RTN4-206ENST00000394611 CLEC17AQ6ZS10 378 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 CLIC4Q9Y696 253 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.11□□□□□ -0.79
RTN4-206ENST00000394611 KIF2AO00139 706 aaPredicted RBP10.11□□□□□ -0.79
RTN4-206ENST00000394611 NEMFO60524 1076 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 RDXP35241 583 aaKnown RBP10.11□□□□□ -0.79
RTN4-206ENST00000394611 JADE2Q9NQC1 790 aa10.11□□□□□ -0.79
RTN4-206ENST00000394611 ATRNO75882 1429 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms