RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ADGRL3Q9HAR2 1447 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 PTPRCP08575 1304 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 RPS6KA4O75676 772 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 ZNF341Q9BYN7 854 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 HMGB1P09429 215 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 AAMPQ13685 434 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 WRNIP1Q96S55 665 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 C22orf23Q9BZE7 217 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 OVOS2A0A0G2JMS6 1433 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 OVOS2A0A0J9YW53 1432 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 OVOS2Q6IE36 1432 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 MYO3BQ8WXR4 1341 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 POTEB2H3BUK9 544 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 FGFR1OPO95684 399 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 CDR1P51861 262 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 SPATA31A3Q5VYP0 1347 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 IARSP41252 1262 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 ARPP19P56211 112 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 FASTKD5Q7L8L6 764 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 PARK7Q99497 189 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 EFCAB6Q5THR3 1501 aa10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 SBNO1A3KN83 1393 aa10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 DGKZQ13574 1117 aa10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 TMTC2Q8N394 836 aa10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 TRIM5Q9C035 493 aa10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 FHDC1Q9C0D6 1143 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-202ENST00000381753 CCDC169A6NNP5 214 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 PHKG2P15735 406 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 FNDC3AQ9Y2H6 1198 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 POLR3AO14802 1390 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 PTPN23Q9H3S7 1636 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 MX1P20591 662 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 ARL1P40616 181 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 YARSP54577 528 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 GPS2Q13227 327 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 DEFB115Q30KQ5 88 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 ELP3Q9H9T3 547 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 TRIM17Q9Y577 477 aa10.52□□□□□ -0.73
LIMCH1-202ENST00000381753 NFKBIBQ15653 356 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 SLC26A6Q9BXS9 759 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 MROH5Q6ZUA9 1318 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 EIF5P55010 431 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 RRP1P56182 461 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 MAP2K1Q02750 393 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 PSMD2Q13200 908 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 RBM28Q9NW13 759 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNF215Q9UL58 517 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 DPEP1P16444 411 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 UBA7P41226 1012 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 METAP2P50579 478 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 SMTNP53814 917 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ABCB5Q2M3G0 1257 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 MICALL2Q8IY33 904 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 LINS1Q8NG48 757 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 LMCD1Q9NZU5 365 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ABCC11Q96J66 1382 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 EPHX2P34913 555 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 VPS36Q86VN1 386 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 MCF2L2Q86YR7 1114 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 MSANTD4Q8NCY6 345 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 CCDC102AQ96A19 550 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ERO1AQ96HE7 468 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 IRAK4Q9NWZ3 460 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 LEMD3Q9Y2U8 911 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ITSN2Q9NZM3 1697 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 KDM4FA0A1W2PPD8 638 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 CWF19L2Q2TBE0 894 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 SESTD1Q86VW0 696 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ADPGKQ9BRR6 497 aa10.51□□□□□ -0.73
LIMCH1-202ENST00000381753 ERLIN2O94905 339 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 CCDC157Q569K6 752 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 SYNDIG1Q9H7V2 258 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 DDX21Q9NR30 783 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNF804BA4D1E1 1349 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 PATL2C9JE40 543 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 ALDH1A1P00352 501 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 ATXN8OSP0DMR3 200 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 PRPF40BQ6NWY9 871 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 CNOT7Q9UIV1 285 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 NUB1Q9Y5A7 615 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 KDM5CP41229 1560 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 GNAT1P11488 350 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 CCDC40Q4G0X9 1142 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 AXDND1Q5T1B0 1012 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 JAKMIP3Q5VZ66 844 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 FAM160B1Q5W0V3 765 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 EVI5LQ96CN4 794 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 RUFY1Q96T51 708 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 HAUS7Q99871 368 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 RSPH6AQ9H0K4 717 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 ECHDC1Q9NTX5 307 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 ECE2O60344 883 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 RABEP1Q15276 862 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 NAP1L4Q99733 375 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 APOL6Q9BWW8 343 aa10.5□□□□□ -0.73
LIMCH1-202ENST00000381753 RIMBP3CA6NJZ7 1639 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 RIMBP3BA6NNM3 1639 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 RIMBP3Q9UFD9 1639 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 ICA1Q05084 483 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 IFRD2Q12894 506 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms