RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 WASHC4Q2M389 1173 aa25.4■■□□□ 1.66
TRIM54-202ENST00000380075 SCAND2PQ9GZW5 306 aaPredicted RBP25.4■■□□□ 1.66
TRIM54-202ENST00000380075 LAMA4Q16363 1823 aa25.39■■□□□ 1.66
TRIM54-202ENST00000380075 UQCRFS1P1P0C7P4 283 aa25.39■■□□□ 1.66
TRIM54-202ENST00000380075 SCARF1Q14162 830 aa25.39■■□□□ 1.66
TRIM54-202ENST00000380075 IMMTQ16891 758 aaKnown RBP25.39■■□□□ 1.66
TRIM54-202ENST00000380075 NRXN2Q9P2S2 1712 aa25.39■■□□□ 1.66
TRIM54-202ENST00000380075 ZNF274Q96GC6 653 aaPredicted RBP25.38■■□□□ 1.65
TRIM54-202ENST00000380075 HCLS1P14317 486 aaPredicted RBP25.37■■□□□ 1.65
TRIM54-202ENST00000380075 MCAMP43121 646 aa25.37■■□□□ 1.65
TRIM54-202ENST00000380075 SCRN1Q12765 414 aa25.37■■□□□ 1.65
TRIM54-202ENST00000380075 PUM3Q15397 648 aaKnown RBP25.37■■□□□ 1.65
TRIM54-202ENST00000380075 LPIN2Q92539 896 aa25.37■■□□□ 1.65
TRIM54-202ENST00000380075 FHDC1Q9C0D6 1143 aaPredicted RBP25.37■■□□□ 1.65
TRIM54-202ENST00000380075 ZSCAN16Q9H4T2 348 aaPredicted RBP25.37■■□□□ 1.65
TRIM54-202ENST00000380075 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
TRIM54-202ENST00000380075 ARID4AP29374 1257 aaPredicted RBP25.36■■□□□ 1.65
TRIM54-202ENST00000380075 UVSSAQ2YD98 709 aa25.36■■□□□ 1.65
TRIM54-202ENST00000380075 BRIP1Q9BX63 1249 aa25.36■■□□□ 1.65
TRIM54-202ENST00000380075 GOLGB1Q14789 3259 aaKnown RBP25.36■■□□□ 1.65
TRIM54-202ENST00000380075 MYH7P12883 1935 aa25.36■■□□□ 1.65
TRIM54-202ENST00000380075 EVCP57679 992 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 SLC10A5Q5PT55 438 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 ARAP2Q8WZ64 1704 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 RTL9Q8NET4 1388 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 JAK2O60674 1132 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 ADD2P35612 726 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 UBE3CQ15386 1083 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 CD2APQ9Y5K6 639 aa25.35■■□□□ 1.65
TRIM54-202ENST00000380075 WDR19Q8NEZ3 1342 aa25.34■■□□□ 1.65
TRIM54-202ENST00000380075 FGFR2P21802 821 aa25.34■■□□□ 1.65
TRIM54-202ENST00000380075 NAA16Q6N069 864 aaPredicted RBP25.34■■□□□ 1.65
TRIM54-202ENST00000380075 C3orf67Q6ZVT6 689 aa25.34■■□□□ 1.65
TRIM54-202ENST00000380075 FERMT3Q86UX7 667 aa25.34■■□□□ 1.65
TRIM54-202ENST00000380075 NSUN7Q8NE18 718 aaKnown RBP25.34■■□□□ 1.65
TRIM54-202ENST00000380075 LRRC2Q9BYS8 371 aa25.34■■□□□ 1.65
TRIM54-202ENST00000380075 AKAP11Q9UKA4 1901 aa25.33■■□□□ 1.65
TRIM54-202ENST00000380075 H3BQV1 296 aa25.33■■□□□ 1.65
TRIM54-202ENST00000380075 FOXP2O15409 715 aa25.33■■□□□ 1.65
TRIM54-202ENST00000380075 IFFO2Q5TF58 517 aa25.33■■□□□ 1.65
TRIM54-202ENST00000380075 TTC6Q86TZ1 520 aa25.33■■□□□ 1.65
TRIM54-202ENST00000380075 PUS7LQ9H0K6 701 aaKnown RBP25.33■■□□□ 1.65
TRIM54-202ENST00000380075 GPAA1O43292 621 aa25.33■■□□□ 1.64
TRIM54-202ENST00000380075 FGAP02671 866 aa25.33■■□□□ 1.64
TRIM54-202ENST00000380075 APOBRQ0VD83 1088 aa25.33■■□□□ 1.64
TRIM54-202ENST00000380075 CCDC102BQ68D86 513 aa25.33■■□□□ 1.64
TRIM54-202ENST00000380075 DTNBO60941 627 aa25.32■■□□□ 1.64
TRIM54-202ENST00000380075 SLC5A1P13866 664 aa25.32■■□□□ 1.64
TRIM54-202ENST00000380075 RESTQ13127 1097 aa25.32■■□□□ 1.64
TRIM54-202ENST00000380075 TTLL5Q6EMB2 1281 aa25.32■■□□□ 1.64
TRIM54-202ENST00000380075 PDE6BP35913 854 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 ZSCAN30Q86W11 494 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 NLGN2Q8NFZ4 835 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 SYT17Q9BSW7 474 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 CHRNA5P30532 468 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 CCDC152Q4G0S7 254 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 PI16Q6UXB8 463 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 SPATA32Q96LK8 384 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 NLRP3Q96P20 1036 aa25.31■■□□□ 1.64
TRIM54-202ENST00000380075 A0A0G2JLW4 131 aa25.3■■□□□ 1.64
TRIM54-202ENST00000380075 PDIA3P30101 505 aaKnown RBP25.3■■□□□ 1.64
TRIM54-202ENST00000380075 MCM5P33992 734 aa25.3■■□□□ 1.64
TRIM54-202ENST00000380075 NCOA7Q8NI08 942 aa25.3■■□□□ 1.64
TRIM54-202ENST00000380075 MPHOSPH8Q99549 860 aa25.3■■□□□ 1.64
TRIM54-202ENST00000380075 SALL1Q9NSC2 1324 aa25.3■■□□□ 1.64
TRIM54-202ENST00000380075 PTPDC1A2A3K4 754 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 KLRG2A4D1S0 409 aaPredicted RBP25.29■■□□□ 1.64
TRIM54-202ENST00000380075 ZNF213O14771 459 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 SLC9C2Q5TAH2 1124 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 CFAP45Q9UL16 551 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 LAMB2P55268 1798 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 TGFB2P61812 414 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 ATL3Q6DD88 541 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 C2CD5Q86YS7 1000 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 MB21D2Q8IYB1 491 aaPredicted RBP25.29■■□□□ 1.64
TRIM54-202ENST00000380075 RNF214Q8ND24 703 aa25.29■■□□□ 1.64
TRIM54-202ENST00000380075 DPEP1P16444 411 aa25.28■■□□□ 1.64
TRIM54-202ENST00000380075 PHKA1P46020 1223 aa25.28■■□□□ 1.64
TRIM54-202ENST00000380075 LEO1Q8WVC0 666 aaPredicted RBP25.28■■□□□ 1.64
TRIM54-202ENST00000380075 DDX11Q96FC9 970 aa25.28■■□□□ 1.64
TRIM54-202ENST00000380075 GOLGA6L4A6NEF3 574 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 CTDNEP1O95476 244 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 RALYLQ86SE5 291 aaKnown RBP25.27■■□□□ 1.64
TRIM54-202ENST00000380075 FUCA2Q9BTY2 467 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 PIH1D3Q9NQM4 214 aaKnown RBP25.27■■□□□ 1.64
TRIM54-202ENST00000380075 ANKRD31Q8N7Z5 1873 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 TNRC6CQ9HCJ0 1690 aaKnown RBP25.27■■□□□ 1.64
TRIM54-202ENST00000380075 H0YIN7 160 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 DHX16O60231 1041 aaKnown RBP25.27■■□□□ 1.64
TRIM54-202ENST00000380075 CRY2Q49AN0 593 aa25.27■■□□□ 1.64
TRIM54-202ENST00000380075 SRGNP10124 158 aa25.26■■□□□ 1.63
TRIM54-202ENST00000380075 KCNA3P22001 575 aa25.26■■□□□ 1.63
TRIM54-202ENST00000380075 IGHMBP2P38935 993 aaKnown RBP25.26■■□□□ 1.63
TRIM54-202ENST00000380075 ZMYM6O95789 1325 aa25.26■■□□□ 1.63
TRIM54-202ENST00000380075 KIF13BQ9NQT8 1826 aa25.26■■□□□ 1.63
TRIM54-202ENST00000380075 DDX60Q8IY21 1712 aaKnown RBP25.26■■□□□ 1.63
TRIM54-202ENST00000380075 IDH1O75874 414 aaKnown RBP25.25■■□□□ 1.63
TRIM54-202ENST00000380075 PDE6AP16499 860 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 FAM173BQ6P4H8 233 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 DDX19AQ9NUU7 478 aaKnown RBP25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms