RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MEGF6O75095 1541 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 CBFA2T2O43439 604 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 ZRANB2O95218 330 aaKnown RBP eCLIP24.45■■□□□ 1.5
UPF3A-202ENST00000375299 IFIT1P09914 478 aaKnown RBP24.45■■□□□ 1.5
UPF3A-202ENST00000375299 ATP1A3P13637 1013 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 PLA2G4AP47712 749 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 TRIM65Q6PJ69 517 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 TIGD1Q96MW7 591 aa24.45■■□□□ 1.5
UPF3A-202ENST00000375299 KIF28PB7ZC32 967 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 FOXO4P98177 505 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 CALCOCO1Q9P1Z2 691 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 KLF18A0A0U1RQI7 1052 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 TMCO3Q6UWJ1 677 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 TMX1Q9H3N1 280 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.44■■□□□ 1.5
UPF3A-202ENST00000375299 TUBE1Q9UJT0 475 aa24.44■■□□□ 1.5
UPF3A-202ENST00000375299 GOLGA8BA8MQT2 603 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 CYP2C19P33261 490 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 KIF23Q02241 960 aaPredicted RBP24.43■■□□□ 1.5
UPF3A-202ENST00000375299 MNS1Q8NEH6 495 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 HPS5Q9UPZ3 1129 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 C4AP0C0L4 1744 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 C4BP0C0L5 1744 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 IL15P40933 162 aaPredicted RBP24.43■■□□□ 1.5
UPF3A-202ENST00000375299 UBASH3AP57075 661 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 ISM2Q6H9L7 571 aa24.43■■□□□ 1.5
UPF3A-202ENST00000375299 PRC1O43663 620 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 TADA3O75528 432 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 IFNL2Q8IZJ0 200 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 DPF2Q92785 391 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 GJB4Q9NTQ9 266 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 WDHD1O75717 1129 aaPredicted RBP24.42■■□□□ 1.5
UPF3A-202ENST00000375299 FCHSD1Q86WN1 690 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 REXO1L1PQ8IX06 675 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 PLBD2Q8NHP8 589 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 OSBP2Q969R2 916 aa24.42■■□□□ 1.5
UPF3A-202ENST00000375299 SERPINC1P01008 464 aa24.41■■□□□ 1.5
UPF3A-202ENST00000375299 MYL5Q02045 173 aa24.41■■□□□ 1.5
UPF3A-202ENST00000375299 IMMTQ16891 758 aaKnown RBP24.41■■□□□ 1.5
UPF3A-202ENST00000375299 MB21D2Q8IYB1 491 aaPredicted RBP24.41■■□□□ 1.5
UPF3A-202ENST00000375299 TTC5Q8N0Z6 440 aa24.41■■□□□ 1.5
UPF3A-202ENST00000375299 CPLX1O14810 134 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 URI1O94763 535 aaPredicted RBP24.4■■□□□ 1.5
UPF3A-202ENST00000375299 SYKP43405 635 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 SLC39A14Q15043 492 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 EFCAB8A8MWE9 144 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 H7C1W4 665 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 FANCGO15287 622 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 HAND2P61296 217 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 VSTM4Q8IW00 320 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 UTP14AQ9BVJ6 771 aaKnown RBP24.4■■□□□ 1.5
UPF3A-202ENST00000375299 TMEM94Q12767 1356 aa24.4■■□□□ 1.5
UPF3A-202ENST00000375299 COL18A1P39060 1754 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 TPM1P09493 284 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 MARCKSP29966 332 aaPredicted RBP24.39■■□□□ 1.5
UPF3A-202ENST00000375299 CFAP100Q494V2 611 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.39■■□□□ 1.5
UPF3A-202ENST00000375299 HPSEQ9Y251 543 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 PARP3Q9Y6F1 533 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 LAMB4A4D0S4 1761 aa24.39■■□□□ 1.5
UPF3A-202ENST00000375299 LRRFIP1Q32MZ4 808 aaKnown RBP24.39■■□□□ 1.49
UPF3A-202ENST00000375299 DCAF5Q96JK2 942 aa24.39■■□□□ 1.49
UPF3A-202ENST00000375299 CARD6Q9BX69 1037 aa24.39■■□□□ 1.49
UPF3A-202ENST00000375299 A0A1B0GUL7 405 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 FOXP2O15409 715 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 ZSCAN12O43309 604 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 RAB11FIP4Q86YS3 637 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 RGS22Q8NE09 1264 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 DDX17Q92841 729 aaKnown RBP24.38■■□□□ 1.49
UPF3A-202ENST00000375299 CYP27B1O15528 508 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 TOP1P11387 765 aaKnown RBP24.38■■□□□ 1.49
UPF3A-202ENST00000375299 CCDC158Q5M9N0 1113 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 ZKSCAN7Q9P0L1 754 aaPredicted RBP24.38■■□□□ 1.49
UPF3A-202ENST00000375299 TJP1Q07157 1748 aa24.38■■□□□ 1.49
UPF3A-202ENST00000375299 EYA2O00167 538 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 ATP8B1O43520 1251 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 MYO1BO43795 1136 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 CSB-PGBD3P0DP91 1061 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 ANTXR2P58335 489 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 LRRC24Q50LG9 513 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 PPP6R2O75170 966 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 NCOA7Q8NI08 942 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 TMEM51Q9NW97 253 aa24.37■■□□□ 1.49
UPF3A-202ENST00000375299 VWA3AA6NCI4 1184 aa24.36■■□□□ 1.49
UPF3A-202ENST00000375299 ARHGAP6O43182 974 aa24.36■■□□□ 1.49
UPF3A-202ENST00000375299 SHC4Q6S5L8 630 aa24.36■■□□□ 1.49
UPF3A-202ENST00000375299 TMEM139Q8IV31 216 aa24.36■■□□□ 1.49
UPF3A-202ENST00000375299 FAM237AA0A1B0GTK4 181 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 TMEM232C9JQI7 657 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 FGAP02671 866 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 GOLGA8FQ08AF8 430 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 GOLGA8DPQ0D2H9 430 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 PNOCQ13519 176 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 TEX35Q5T0J7 233 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 OLFM4Q6UX06 510 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 RALYLQ86SE5 291 aaKnown RBP24.35■■□□□ 1.49
UPF3A-202ENST00000375299 JMYQ8N9B5 988 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 MPHOSPH8Q99549 860 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 PPP2R2CQ9Y2T4 447 aa24.35■■□□□ 1.49
UPF3A-202ENST00000375299 WDR19Q8NEZ3 1342 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms