RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CYP7A1P22680 504 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 NUCB2P80303 420 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 ANKRD1Q15327 319 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 Q6ZUG5 572 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 DHX32Q7L7V1 743 aaKnown RBP16.38■□□□□ 0.21
PTPRF-202ENST00000372405 CCDC83Q8IWF9 413 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 NECAB1Q8N987 351 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 PODXL2Q9NZ53 605 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 JAG2Q9Y219 1238 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 CHD4Q14839 1912 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 GSG1L2A8MUP6 293 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 PATL2C9JE40 543 aaKnown RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 UFL1O94874 794 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 HMGB1P09429 215 aaKnown RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 CHAF1AQ13111 956 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 ALX1Q15699 326 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 TDRD7Q8NHU6 1098 aaKnown RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 PDGFDQ9GZP0 370 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 STK32BQ9NY57 414 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 POLLQ9UGP5 575 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 DUOX1Q9NRD9 1551 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 PPEF1O14829 653 aaPredicted RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 APPP05067 770 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 NPR1P16066 1061 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 TBC1D10CQ8IV04 446 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 NKX2-3Q8TAU0 364 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 NSUN4Q96CB9 384 aaKnown RBP16.37■□□□□ 0.21
PTPRF-202ENST00000372405 AGXT2Q9BYV1 514 aa16.37■□□□□ 0.21
PTPRF-202ENST00000372405 ZMYM6O95789 1325 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 KIAA1551Q9HCM1 1747 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 ZNF213O14771 459 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 ATP2B4P23634 1241 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 PRDX5P30044 214 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 CLEC17AQ6ZS10 378 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 SP8Q8IXZ3 490 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 IFNL3Q8IZI9 196 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 TBC1D16Q8TBP0 767 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 RIOK1Q9BRS2 568 aaKnown RBP16.36■□□□□ 0.21
PTPRF-202ENST00000372405 GGA1Q9UJY5 639 aa16.36■□□□□ 0.21
PTPRF-202ENST00000372405 PDE6BP35913 854 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 MECOMQ03112 1051 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 OLFM4Q6UX06 510 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 CHST3Q7LGC8 479 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 ATP6V0A2Q9Y487 856 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 TIAM2Q8IVF5 1701 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 NAA16Q6N069 864 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-202ENST00000372405 TMC4Q7Z404 712 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 MB21D2Q8IYB1 491 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-202ENST00000372405 BRF1Q92994 677 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 SLC4A4Q9Y6R1 1079 aa16.35■□□□□ 0.21
PTPRF-202ENST00000372405 BRD1O95696 1058 aa16.34■□□□□ 0.21
PTPRF-202ENST00000372405 ZNF804AQ7Z570 1209 aa16.34■□□□□ 0.21
PTPRF-202ENST00000372405 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-202ENST00000372405 TACC3Q9Y6A5 838 aa16.34■□□□□ 0.21
PTPRF-202ENST00000372405 BAZ2AQ9UIF9 1905 aaKnown RBP16.34■□□□□ 0.21
PTPRF-202ENST00000372405 SALL1Q9NSC2 1324 aa16.34■□□□□ 0.21
PTPRF-202ENST00000372405 MAGEB6P1A0A0J9YX57 407 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 GNAT2P19087 354 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 BAG6P46379 1132 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 ANTXR2P58335 489 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 DYNLL1P63167 89 aaKnown RBP16.33■□□□□ 0.21
PTPRF-202ENST00000372405 GRIK5Q16478 980 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 MASTLQ96GX5 879 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 CD209Q9NNX6 404 aa16.33■□□□□ 0.21
PTPRF-202ENST00000372405 GPHNQ9NQX3 736 aaPredicted RBP16.33■□□□□ 0.21
PTPRF-202ENST00000372405 BAG4O95429 457 aaKnown RBP16.33■□□□□ 0.2
PTPRF-202ENST00000372405 IL1R1P14778 569 aa16.33■□□□□ 0.2
PTPRF-202ENST00000372405 STK3Q13188 491 aa16.33■□□□□ 0.2
PTPRF-202ENST00000372405 FBXL16Q8N461 479 aa16.33■□□□□ 0.2
PTPRF-202ENST00000372405 SDR42E1Q8WUS8 393 aa16.33■□□□□ 0.2
PTPRF-202ENST00000372405 NAPBQ9H115 298 aa16.33■□□□□ 0.2
PTPRF-202ENST00000372405 SLX4Q8IY92 1834 aa16.32■□□□□ 0.2
PTPRF-202ENST00000372405 NCOA7Q8NI08 942 aa16.32■□□□□ 0.2
PTPRF-202ENST00000372405 INCENPQ9NQS7 918 aa16.32■□□□□ 0.2
PTPRF-202ENST00000372405 SMC3Q9UQE7 1217 aa16.32■□□□□ 0.2
PTPRF-202ENST00000372405 GJB2P29033 226 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 ALDH1B1P30837 517 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 APOBRQ0VD83 1088 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 SF3B2Q13435 895 aaKnown RBP16.31■□□□□ 0.2
PTPRF-202ENST00000372405 FOXD4L5Q5VV16 416 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-202ENST00000372405 FOXD4L4Q8WXT5 416 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-202ENST00000372405 GTF3C6Q969F1 213 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 CHAMP1Q96JM3 812 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 GBP4Q96PP9 640 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 NEDD4P46934 1319 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 C6orf229H3BNL8 230 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 CTDSPL2Q05D32 466 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 C2CD5Q86YS7 1000 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 WDR66Q8TBY9 1149 aa16.31■□□□□ 0.2
PTPRF-202ENST00000372405 PRC1O43663 620 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 SYT1P21579 422 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 MCM5P33992 734 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 TDO2P48775 406 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 FGD1P98174 961 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 SCRN1Q12765 414 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 MYH2Q9UKX2 1941 aa16.3■□□□□ 0.2
PTPRF-202ENST00000372405 GOLGB1Q14789 3259 aaKnown RBP16.3■□□□□ 0.2
PTPRF-202ENST00000372405 SMIM22K7EJ46 135 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 EVCP57679 992 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 CYB5R4Q7L1T6 521 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 229.5 ms