RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 CRKP46108 304 aa20.84■□□□□ 0.93
CLN3-203ENST00000357806 CCDC158Q5M9N0 1113 aa20.84■□□□□ 0.93
CLN3-203ENST00000357806 TEKT1Q969V4 418 aa20.84■□□□□ 0.93
CLN3-203ENST00000357806 PAPPA2Q9BXP8 1791 aa20.84■□□□□ 0.93
CLN3-203ENST00000357806 CELF2O95319 508 aaKnown RBP20.83■□□□□ 0.93
CLN3-203ENST00000357806 TTC39AQ5SRH9 613 aa20.83■□□□□ 0.93
CLN3-203ENST00000357806 EAF2Q96CJ1 260 aaPredicted RBP20.83■□□□□ 0.93
CLN3-203ENST00000357806 ZNF408Q9H9D4 720 aa20.83■□□□□ 0.93
CLN3-203ENST00000357806 DBNLQ9UJU6 430 aaKnown RBP20.83■□□□□ 0.93
CLN3-203ENST00000357806 PCDHAC2Q9Y5I4 1007 aa20.83■□□□□ 0.93
CLN3-203ENST00000357806 APBB1O00213 710 aa20.82■□□□□ 0.92
CLN3-203ENST00000357806 LDHBP07195 334 aaKnown RBP20.82■□□□□ 0.92
CLN3-203ENST00000357806 PRDX5P30044 214 aa20.82■□□□□ 0.92
CLN3-203ENST00000357806 AACSQ86V21 672 aa20.82■□□□□ 0.92
CLN3-203ENST00000357806 CLASRPQ8N2M8 674 aaKnown RBP20.82■□□□□ 0.92
CLN3-203ENST00000357806 PRMT6Q96LA8 375 aaPredicted RBP20.82■□□□□ 0.92
CLN3-203ENST00000357806 IL1RAPL2Q9NP60 686 aa20.82■□□□□ 0.92
CLN3-203ENST00000357806 AK9Q5TCS8 1911 aa20.82■□□□□ 0.92
CLN3-203ENST00000357806 CST9Q5W186 159 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 SPATA5Q8NB90 893 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 MRIQ9BWK5 157 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 CCDC8Q9H0W5 538 aaPredicted RBP20.81■□□□□ 0.92
CLN3-203ENST00000357806 TLR7Q9NYK1 1049 aaKnown RBP20.81■□□□□ 0.92
CLN3-203ENST00000357806 HMG20BQ9P0W2 317 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 SUPT16HQ9Y5B9 1047 aaKnown RBP20.81■□□□□ 0.92
CLN3-203ENST00000357806 MCAMP43121 646 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 CDCA5Q96FF9 252 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 ABCF2Q9UG63 623 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 ABT1Q9ULW3 272 aaKnown RBP20.81■□□□□ 0.92
CLN3-203ENST00000357806 MYH7P12883 1935 aa20.81■□□□□ 0.92
CLN3-203ENST00000357806 CLRN2A0PK11 232 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 AAMPQ13685 434 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 SPTY2D1Q68D10 685 aaPredicted RBP20.8■□□□□ 0.92
CLN3-203ENST00000357806 HHIPL2Q6UWX4 724 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 DLK2Q6UY11 383 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 KLRG1Q96E93 195 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 ZNF512BQ96KM6 892 aaPredicted RBP20.8■□□□□ 0.92
CLN3-203ENST00000357806 ZDHHC15Q96MV8 337 aa20.8■□□□□ 0.92
CLN3-203ENST00000357806 SCAF8Q9UPN6 1271 aaKnown RBP20.8■□□□□ 0.92
CLN3-203ENST00000357806 CNTNAP1P78357 1384 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 SPDYE2Q495Y8 402 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 PI16Q6UXB8 463 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 DNAJC5GQ8N7S2 189 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 VEZTQ9HBM0 779 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 PCDHB15Q9Y5E8 787 aa20.79■□□□□ 0.92
CLN3-203ENST00000357806 CDK5RAP2Q96SN8 1893 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 THSD7BQ9C0I4 1608 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 DZIP1Q86YF9 867 aaKnown RBP20.78■□□□□ 0.92
CLN3-203ENST00000357806 LRRCC1Q9C099 1032 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 TDRD3Q9H7E2 651 aaKnown RBP20.78■□□□□ 0.92
CLN3-203ENST00000357806 PPP2R3BQ9Y5P8 575 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 TLL2Q9Y6L7 1015 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 AOX1Q06278 1338 aa20.78■□□□□ 0.92
CLN3-203ENST00000357806 IFIT2P09913 472 aaKnown RBP20.77■□□□□ 0.92
CLN3-203ENST00000357806 TNFAIP1Q13829 316 aa20.77■□□□□ 0.92
CLN3-203ENST00000357806 ERICH6Q7L0X2 663 aa20.77■□□□□ 0.92
CLN3-203ENST00000357806 MKRN1Q9UHC7 482 aaKnown RBP20.77■□□□□ 0.92
CLN3-203ENST00000357806 FOCADQ5VW36 1801 aa20.77■□□□□ 0.92
CLN3-203ENST00000357806 RASSF10A6NK89 507 aa20.76■□□□□ 0.91
CLN3-203ENST00000357806 DIXDC1Q155Q3 683 aa20.76■□□□□ 0.91
CLN3-203ENST00000357806 SLF2Q8IX21 1173 aa20.76■□□□□ 0.91
CLN3-203ENST00000357806 DCTPP1Q9H773 170 aa20.76■□□□□ 0.91
CLN3-203ENST00000357806 GBA2Q9HCG7 927 aaPredicted RBP20.76■□□□□ 0.91
CLN3-203ENST00000357806 ZNF70Q9UC06 446 aaPredicted RBP20.76■□□□□ 0.91
CLN3-203ENST00000357806 OTOFQ9HC10 1997 aa20.76■□□□□ 0.91
CLN3-203ENST00000357806 NF2P35240 595 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 SAPCD2Q86UD0 394 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 C2orf69Q8N8R5 385 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 BCL11AQ9H165 835 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 DEFB129Q9H1M3 183 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 TMOD2Q9NZR1 351 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 DAGLAQ9Y4D2 1042 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 DEFB115Q30KQ5 88 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 APOBEC3HQ6NTF7 200 aaKnown RBP20.75■□□□□ 0.91
CLN3-203ENST00000357806 SNRKQ9NRH2 765 aa20.75■□□□□ 0.91
CLN3-203ENST00000357806 TNNI2P48788 182 aa20.74■□□□□ 0.91
CLN3-203ENST00000357806 PRAMEF18Q5VWM3 479 aa20.74■□□□□ 0.91
CLN3-203ENST00000357806 TBC1D9Q6ZT07 1266 aa20.74■□□□□ 0.91
CLN3-203ENST00000357806 LRP2BPQ9P2M1 347 aa20.74■□□□□ 0.91
CLN3-203ENST00000357806 FKBP1BP68106 108 aa20.73■□□□□ 0.91
CLN3-203ENST00000357806 MECOMQ03112 1051 aa20.73■□□□□ 0.91
CLN3-203ENST00000357806 HHIPL1Q96JK4 782 aa20.73■□□□□ 0.91
CLN3-203ENST00000357806 RAI14Q9P0K7 980 aa20.73■□□□□ 0.91
CLN3-203ENST00000357806 GAKO14976 1311 aa20.73■□□□□ 0.91
CLN3-203ENST00000357806 MROH7-TTC4A0A0A0MT08 1334 aa20.72■□□□□ 0.91
CLN3-203ENST00000357806 CYP2E1P05181 493 aaPredicted RBP20.72■□□□□ 0.91
CLN3-203ENST00000357806 ZAP70P43403 619 aa20.72■□□□□ 0.91
CLN3-203ENST00000357806 GSTO1P78417 241 aa20.72■□□□□ 0.91
CLN3-203ENST00000357806 RASA3Q14644 834 aa20.72■□□□□ 0.91
CLN3-203ENST00000357806 PAXIP1Q6ZW49 1069 aaPredicted RBP20.72■□□□□ 0.91
CLN3-203ENST00000357806 SSC5DA1L4H1 1573 aa20.71■□□□□ 0.91
CLN3-203ENST00000357806 TCP10L2B9ZVM9 353 aa20.71■□□□□ 0.91
CLN3-203ENST00000357806 HUNKP57058 714 aa20.71■□□□□ 0.91
CLN3-203ENST00000357806 EXOC6Q8TAG9 804 aa20.71■□□□□ 0.91
CLN3-203ENST00000357806 NSUN4Q96CB9 384 aaKnown RBP20.71■□□□□ 0.91
CLN3-203ENST00000357806 PCNTO95613 3336 aa20.71■□□□□ 0.91
CLN3-203ENST00000357806 SMARCA5O60264 1052 aaPredicted RBP20.7■□□□□ 0.9
CLN3-203ENST00000357806 IGSF3O75054 1194 aa20.7■□□□□ 0.9
CLN3-203ENST00000357806 ECE1P42892 770 aa20.7■□□□□ 0.9
CLN3-203ENST00000357806 HDAC1Q13547 482 aaPredicted RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 728.2 ms