RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 CDC45O75419 566 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 POU3F3P20264 500 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 MSX1P28360 303 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 MCM4P33991 863 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 ATP11AP98196 1134 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CLCQ05315 142 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 FAM50AQ14320 339 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 Q6ZNB5 142 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 TRIM22Q8IYM9 498 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 SEC16BQ96JE7 1060 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 NOC4LQ9BVI4 516 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CHPF2Q9P2E5 772 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 STARD13Q9Y3M8 1113 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 NHSL1Q5SYE7 1610 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 J3QW42 95 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 ANAPC15P60006 121 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 ZYXQ15942 572 aaKnown RBP2.31□□□□□ -2.04
BRCA1-202ENST00000354071 NFE2L2Q16236 605 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 GNASQ5JWF2 1037 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 SNAP47Q5SQN1 464 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 TTBK2Q6IQ55 1244 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 C20orf204Q6ZNR8 217 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 RSRP1Q9BUV0 290 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 LIN7BQ9HAP6 207 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 DDX56Q9NY93 547 aaKnown RBP2.31□□□□□ -2.04
BRCA1-202ENST00000354071 PCDHB10Q9UN67 800 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 NFKBIEO00221 500 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 GJB6O95452 261 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 SELPP16109 830 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 PPP2R5EQ16537 467 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 DDR2Q16832 855 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 ASAP3Q8TDY4 903 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 ANKRD24Q8TF21 1146 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 OSMRQ99650 979 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 SRRTQ9BXP5 876 aaKnown RBP2.31□□□□□ -2.04
BRCA1-202ENST00000354071 BRMS1Q9HCU9 246 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 DZANK1Q9NVP4 752 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 PRKAG3Q9UGI9 489 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 MSRB2Q9Y3D2 182 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 RB1CC1Q8TDY2 1594 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 TMEM238LA0A1B0GVL6 79 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 LRRC41Q15345 812 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 FAM182BQ5T319 152 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 IER5Q5VY09 327 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 C6orf15Q6UXA7 325 aaPredicted RBP2.31□□□□□ -2.04
BRCA1-202ENST00000354071 RELL1Q8IUW5 271 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 GSX2Q9BZM3 304 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 MUC3BQ9H195 1237 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 FAM86C1Q9NVL1 165 aa2.31□□□□□ -2.04
BRCA1-202ENST00000354071 DNAJA2O60884 412 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 DNAJC6O75061 913 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ECEL1O95672 775 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ITGB7P26010 798 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 GMPRP36959 345 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 PLEKHG4Q58EX7 1191 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ZNF385CQ66K41 422 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 LINC00114Q6XXX2 140 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FAM196AQ6ZSG2 479 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 JDP2Q8WYK2 163 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FRMD6Q96NE9 622 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 SLC30A3Q99726 388 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 SEC31BQ9NQW1 1179 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 SUPT16HQ9Y5B9 1047 aaKnown RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 IRS4O14654 1257 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 TATP17735 454 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NFKB1P19838 968 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 RNF187Q5TA31 235 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 KIAA0319Q5VV43 1072 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 HGSNATQ68CP4 663 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NLRP13Q86W25 1043 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 LSRQ86X29 649 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 CCNJLQ8IV13 435 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FMNL3Q8IVF7 1028 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 GAS2L1Q99501 681 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NT5C1AQ9BXI3 368 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 SPC25Q9HBM1 224 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 KCNQ5Q9NR82 932 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NAGPAQ9UK23 515 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FAN1Q9Y2M0 1017 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 CEP164Q9UPV0 1460 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FAM221AA4D161 298 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 MASP1P48740 699 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 YOD1Q5VVQ6 348 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 FOXB2Q5VYV0 432 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 KIAA0907Q7Z7F0 614 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NCAPG2Q86XI2 1143 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NECAB3Q96P71 396 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ZC3H12CQ9C0D7 883 aaKnown RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 NRSN2Q9GZP1 204 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 IGFLR1Q9H665 355 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 LRRC4BQ9NT99 713 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 CORINQ9Y5Q5 1042 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 GPC6Q9Y625 555 aaPredicted RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 PTCH2Q9Y6C5 1203 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 STRCQ7RTU9 1775 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 SHISA8B8ZZ34 492 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 U2SURPO15042 1029 aaKnown RBP2.3□□□□□ -2.04
BRCA1-202ENST00000354071 ASMTLO95671 621 aa2.3□□□□□ -2.04
BRCA1-202ENST00000354071 RARAP10276 462 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms