RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 ZHX3Q9H4I2 956 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 ZBTB1Q9Y2K1 713 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 ZNF202O95125 648 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 SSBP05455 408 aaKnown RBP eCLIP9.5□□□□□ -0.89
HPS4-201ENST00000336873 NAP1L1P55209 391 aaKnown RBP9.5□□□□□ -0.89
HPS4-201ENST00000336873 SSRP1Q08945 709 aaKnown RBP9.5□□□□□ -0.89
HPS4-201ENST00000336873 FKBP15Q5T1M5 1219 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 TFCP2L1Q9NZI6 479 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 ADAMTS13Q76LX8 1427 aa9.5□□□□□ -0.89
HPS4-201ENST00000336873 CYP2D7A0A087X1C5 515 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 BTBD18B2RXH4 712 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 ZNF500O60304 480 aaPredicted RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 CDC25AP30304 524 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 SNW1Q13573 536 aaKnown RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 ZSCAN25Q6NSZ9 544 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 CCDC34Q96HJ3 373 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 HAUS7Q99871 368 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 XPO4Q9C0E2 1151 aaKnown RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 LZTFL1Q9NQ48 299 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 COPRSQ9NQ92 184 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 F8W031 263 aaPredicted RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 ATP1A3P13637 1013 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 CASP1P29466 404 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 TM6SF1Q9BZW5 370 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 GNG11P61952 73 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 CCDC144BQ3MJ40 725 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 NOC3LQ8WTT2 800 aaKnown RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 UBXN4Q92575 508 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 AOX1Q06278 1338 aa9.49□□□□□ -0.89
HPS4-201ENST00000336873 SETD1AO15047 1707 aaKnown RBP9.49□□□□□ -0.89
HPS4-201ENST00000336873 USP27XA6NNY8 438 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 POLR2DO15514 142 aaKnown RBP9.48□□□□□ -0.89
HPS4-201ENST00000336873 GYG1P46976 350 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 FAM160A1Q05DH4 1040 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 ST3GAL1Q11201 340 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 WTAPQ15007 396 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 PDIA6Q15084 440 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 HS1BP3Q53T59 392 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 ANKIB1Q9P2G1 1089 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 OVOS2A0A0J9YW53 1432 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 OVOS2Q6IE36 1432 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 ZNF174Q15697 407 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 ELF2Q15723 593 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 MEX3CQ5U5Q3 659 aaKnown RBP9.48□□□□□ -0.89
HPS4-201ENST00000336873 CCDC102BQ68D86 513 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 KRT40Q6A162 431 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 PDLIM2Q96JY6 352 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 MTERF4Q7Z6M4 381 aaKnown RBP9.48□□□□□ -0.89
HPS4-201ENST00000336873 GOLPH3LQ9H4A5 285 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 SENP2Q9HC62 589 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 VPS54Q9P1Q0 977 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 CGNQ9P2M7 1197 aaKnown RBP9.48□□□□□ -0.89
HPS4-201ENST00000336873 SALL3Q9BXA9 1300 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 SPATA31D1Q6ZQQ2 1576 aa9.48□□□□□ -0.89
HPS4-201ENST00000336873 RIMS1Q86UR5 1692 aaKnown RBP9.48□□□□□ -0.89
HPS4-201ENST00000336873 SLC5A1P13866 664 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 XBP1P17861 261 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 CCT6AP40227 531 aaKnown RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 ADKP55263 362 aaKnown RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 FAM193AP78312 1265 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 NR5A1Q13285 461 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 FAM47AQ5JRC9 791 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 SMYD4Q8IYR2 804 aaPredicted RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 HOOK1Q9UJC3 728 aaKnown RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 TSR1Q2NL82 804 aaKnown RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 ANO1Q5XXA6 986 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 CLEC17AQ6ZS10 378 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 CCDC191Q8NCU4 936 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 MYRIPQ8NFW9 859 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 DESI2Q9BSY9 194 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 SLAIN2Q9P270 581 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 ZNF215Q9UL58 517 aaPredicted RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 V9GY48 417 aaPredicted RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 TMEM131LA2VDJ0 1609 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 TSPY2A6NKD2 308 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 CDKL5O76039 1030 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 NLRP5P59047 1200 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 TCIRG1Q13488 830 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 RTN1Q16799 776 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 MYSM1Q5VVJ2 828 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 DIS3L2Q8IYB7 885 aaKnown RBP9.47□□□□□ -0.89
HPS4-201ENST00000336873 APPBP2Q92624 585 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 TRIM34Q9BYJ4 488 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 BABAM1Q9NWV8 329 aa9.47□□□□□ -0.89
HPS4-201ENST00000336873 VWA3AA6NCI4 1184 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 TPM1P09493 284 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 PPFIBP1Q86W92 1011 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 PRIMPOLQ96LW4 560 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 KCNF1Q9H3M0 494 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 MKNK2Q9HBH9 465 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 ANGEL1Q9UNK9 670 aaKnown RBP9.46□□□□□ -0.89
HPS4-201ENST00000336873 PFKFB1P16118 471 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 MCM7P33993 719 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 IKQ13123 557 aaPredicted RBP9.46□□□□□ -0.89
HPS4-201ENST00000336873 KIAA1524Q8TCG1 905 aa9.46□□□□□ -0.89
HPS4-201ENST00000336873 PHACTR2O75167 634 aa9.46□□□□□ -0.9
HPS4-201ENST00000336873 EIF6P56537 245 aaKnown RBP9.46□□□□□ -0.9
HPS4-201ENST00000336873 ERCC6LQ2NKX8 1250 aa9.46□□□□□ -0.9
HPS4-201ENST00000336873 KCNG4Q8TDN1 519 aa9.46□□□□□ -0.9
HPS4-201ENST00000336873 EPC1Q9H2F5 836 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms