RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PAG1Q9NWQ8 432 aa17.58■□□□□ 0.41
SHH-201ENST00000297261 MCM3P25205 808 aa17.58■□□□□ 0.4
SHH-201ENST00000297261 CCDC152Q4G0S7 254 aa17.58■□□□□ 0.4
SHH-201ENST00000297261 KCNG4Q8TDN1 519 aa17.58■□□□□ 0.4
SHH-201ENST00000297261 WASF1Q92558 559 aa17.58■□□□□ 0.4
SHH-201ENST00000297261 MYO6Q9UM54 1294 aa17.58■□□□□ 0.4
SHH-201ENST00000297261 TCIRG1Q13488 830 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 CDC5LQ99459 802 aaKnown RBP17.57■□□□□ 0.4
SHH-201ENST00000297261 SSH2Q76I76 1423 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 N4BP3O15049 544 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 YEATS4O95619 227 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 KLF18A0A0U1RQI7 1052 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 SPTLC2O15270 562 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 HEG1Q9ULI3 1381 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 SGSM2O43147 1006 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 MCMDC2Q4G0Z9 681 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 JADE2Q9NQC1 790 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 CEP131Q9UPN4 1083 aa17.57■□□□□ 0.4
SHH-201ENST00000297261 A0A1B0GUL7 405 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 ERLIN2O94905 339 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 PAFAH1B1P43034 410 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 MAP3K12Q12852 859 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 ZHX3Q9H4I2 956 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 NRXN3Q9Y4C0 1643 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 TUBB4AP04350 444 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 PPP2R3AQ06190 1150 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 CAVIN4Q5BKX8 364 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 CDC37L1Q7L3B6 337 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 UNC5CLQ8IV45 518 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 LEO1Q8WVC0 666 aaPredicted RBP17.56■□□□□ 0.4
SHH-201ENST00000297261 FAM227BQ96M60 508 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 CLSTN2Q9H4D0 955 aa17.56■□□□□ 0.4
SHH-201ENST00000297261 IARSP41252 1262 aaKnown RBP17.56■□□□□ 0.4
SHH-201ENST00000297261 TTC31Q49AM3 519 aaPredicted RBP17.56■□□□□ 0.4
SHH-201ENST00000297261 GOLGA6L7A0A1B0GV03 622 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 ENOX2Q16206 610 aaKnown RBP17.55■□□□□ 0.4
SHH-201ENST00000297261 ITGA6P23229 1130 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 NBPF5PQ86XG9 351 aaPredicted RBP17.55■□□□□ 0.4
SHH-201ENST00000297261 OSBPL3Q9H4L5 887 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 BCCIPQ9P287 314 aaKnown RBP eCLIP17.55■□□□□ 0.4
SHH-201ENST00000297261 UTP14CQ5TAP6 766 aaKnown RBP17.55■□□□□ 0.4
SHH-201ENST00000297261 NRBP1Q9UHY1 535 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 CCDC175P0C221 793 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 APOBRQ0VD83 1088 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 PIGBQ92521 554 aa17.55■□□□□ 0.4
SHH-201ENST00000297261 EDC3Q96F86 508 aaKnown RBP17.55■□□□□ 0.4
SHH-201ENST00000297261 GOLGA8AA7E2F4 631 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 RFC4P35249 363 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 ZFYVE27Q5T4F4 411 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 CCDC87Q9NVE4 849 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 CEMIPQ8WUJ3 1361 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 PTPDC1A2A3K4 754 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 STAP2Q9UGK3 403 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 SSBP05455 408 aaKnown RBP eCLIP17.54■□□□□ 0.4
SHH-201ENST00000297261 TAF4BQ92750 862 aa17.54■□□□□ 0.4
SHH-201ENST00000297261 IQSEC3Q9UPP2 1182 aaPredicted RBP17.54■□□□□ 0.4
SHH-201ENST00000297261 IGKV5-2P06315 115 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 KIAA1524Q8TCG1 905 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 AFMP43652 599 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 HLTFQ14527 1009 aaKnown RBP eCLIP17.53■□□□□ 0.4
SHH-201ENST00000297261 DNAJC21Q5F1R6 531 aaKnown RBP17.53■□□□□ 0.4
SHH-201ENST00000297261 NAPBQ9H115 298 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 SLC12A7Q9Y666 1083 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 MST1RQ04912 1400 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 IFIT3O14879 490 aaKnown RBP17.53■□□□□ 0.4
SHH-201ENST00000297261 FAM160A1Q05DH4 1040 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 POLA2Q14181 598 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 TTF1Q15361 905 aaPredicted RBP17.53■□□□□ 0.4
SHH-201ENST00000297261 ZNF569Q5MCW4 686 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 TICAM2Q86XR7 235 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 RAD50Q92878 1312 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 ATP2C2O75185 946 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 HSPA4P34932 840 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 NEK11Q8NG66 645 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 SETDB2Q96T68 719 aa17.53■□□□□ 0.4
SHH-201ENST00000297261 SH3TC1Q8TE82 1336 aa17.52■□□□□ 0.4
SHH-201ENST00000297261 KRT18P05783 430 aaKnown RBP17.52■□□□□ 0.4
SHH-201ENST00000297261 ZBTB1Q9Y2K1 713 aa17.52■□□□□ 0.4
SHH-201ENST00000297261 ADCY9O60503 1353 aa17.52■□□□□ 0.4
SHH-201ENST00000297261 UQCRFS1P1P0C7P4 283 aa17.52■□□□□ 0.39
SHH-201ENST00000297261 ANKIB1Q9P2G1 1089 aa17.52■□□□□ 0.39
SHH-201ENST00000297261 CTAGE9A4FU28 777 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 MINDY4BA8MYZ0 360 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 EBAG9O00559 213 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 CCDC129Q6ZRS4 1044 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 ANKRD18AQ8IVF6 992 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 METAP2P50579 478 aaKnown RBP eCLIP17.51■□□□□ 0.39
SHH-201ENST00000297261 STX17P56962 302 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 CEP112Q8N8E3 955 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 ALG1Q9BT22 464 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 SLC26A6Q9BXS9 759 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 MICALCLQ6ZW33 695 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 DRC1Q96MC2 740 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 USO1O60763 962 aaKnown RBP17.51■□□□□ 0.39
SHH-201ENST00000297261 OAS2P29728 719 aaKnown RBP17.51■□□□□ 0.39
SHH-201ENST00000297261 TTC6Q86TZ1 520 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 CCDC113Q9H0I3 377 aa17.51■□□□□ 0.39
SHH-201ENST00000297261 TLR7Q9NYK1 1049 aaKnown RBP17.51■□□□□ 0.39
SHH-201ENST00000297261 ANKRD26Q9UPS8 1709 aa17.5■□□□□ 0.39
SHH-201ENST00000297261 SLC9C2Q5TAH2 1124 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms