RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 CHAF1AQ13111 956 aaPredicted RBP23.4■■□□□ 1.34
TNFRSF1A-201ENST00000162749 IMMTQ16891 758 aaKnown RBP23.4■■□□□ 1.34
TNFRSF1A-201ENST00000162749 TDRD7Q8NHU6 1098 aaKnown RBP23.4■■□□□ 1.34
TNFRSF1A-201ENST00000162749 ARMT1Q9H993 441 aa23.4■■□□□ 1.34
TNFRSF1A-201ENST00000162749 SLX4Q8IY92 1834 aa23.4■■□□□ 1.34
TNFRSF1A-201ENST00000162749 CYP7A1P22680 504 aa23.39■■□□□ 1.34
TNFRSF1A-201ENST00000162749 INTS4Q96HW7 963 aaKnown RBP23.39■■□□□ 1.34
TNFRSF1A-201ENST00000162749 ALDH8A1Q9H2A2 487 aaPredicted RBP23.39■■□□□ 1.34
TNFRSF1A-201ENST00000162749 HAND2P61296 217 aa23.39■■□□□ 1.33
TNFRSF1A-201ENST00000162749 LCORLQ8N3X6 602 aa23.39■■□□□ 1.33
TNFRSF1A-201ENST00000162749 MIGA1Q8NAN2 632 aa23.39■■□□□ 1.33
TNFRSF1A-201ENST00000162749 JAG2Q9Y219 1238 aa23.39■■□□□ 1.33
TNFRSF1A-201ENST00000162749 PRDX5P30044 214 aa23.38■■□□□ 1.33
TNFRSF1A-201ENST00000162749 CWC22Q9HCG8 908 aaKnown RBP23.38■■□□□ 1.33
TNFRSF1A-201ENST00000162749 APPP05067 770 aa23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 OLFM4Q6UX06 510 aa23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 NSUN4Q96CB9 384 aaKnown RBP23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 BAZ2AQ9UIF9 1905 aaKnown RBP23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 LARGE1O95461 756 aa23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 HMGB1P09429 215 aaKnown RBP23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 TOB2Q14106 344 aaPredicted RBP23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 C2CD5Q86YS7 1000 aa23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 EPB41L4AQ9HCS5 686 aaPredicted RBP23.37■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ZMYM6O95789 1325 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 PATL2C9JE40 543 aaKnown RBP23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 MECOMQ03112 1051 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 NAA16Q6N069 864 aaPredicted RBP23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ZNF622Q969S3 477 aaKnown RBP eCLIP23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 CD209Q9NNX6 404 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 SALL1Q9NSC2 1324 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 H0YIN7 160 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 C6orf229H3BNL8 230 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ZNF213O14771 459 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ANKRD1Q15327 319 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 CCDC125Q86Z20 511 aa23.36■■□□□ 1.33
TNFRSF1A-201ENST00000162749 GSG1L2A8MUP6 293 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 GNAT2P19087 354 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 RAB3GAP1Q15042 981 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ALX1Q15699 326 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 DHX32Q7L7V1 743 aaKnown RBP23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 TPCN1Q9ULQ1 816 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 MYH2Q9UKX2 1941 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 PRKAB2O43741 272 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 IL1R1P14778 569 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ME3Q16798 604 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 IFNL3Q8IZI9 196 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 WDR66Q8TBY9 1149 aa23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 ZSCAN31Q96LW9 406 aaPredicted RBP23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 RIOK1Q9BRS2 568 aaKnown RBP23.35■■□□□ 1.33
TNFRSF1A-201ENST00000162749 DLEC1Q9Y238 1755 aa23.34■■□□□ 1.33
TNFRSF1A-201ENST00000162749 NBPF3Q9H094 633 aa23.34■■□□□ 1.33
TNFRSF1A-201ENST00000162749 SH2B1Q9NRF2 756 aaPredicted RBP23.34■■□□□ 1.33
TNFRSF1A-201ENST00000162749 STYK1Q6J9G0 422 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 MPNDQ8N594 471 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 TNPO1Q92973 898 aaKnown RBP23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 SLC4A4Q9Y6R1 1079 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 MAGEB6P1A0A0J9YX57 407 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 CHRNA5P30532 468 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 Q6ZUG5 572 aa23.33■■□□□ 1.33
TNFRSF1A-201ENST00000162749 EXOSC10Q01780 885 aaKnown RBP23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 PKP1Q13835 747 aa23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 NAPBQ9H115 298 aa23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 SPTY2D1Q68D10 685 aaPredicted RBP23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 SLC16A10Q8TF71 515 aa23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 LRRC2Q9BYS8 371 aa23.32■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TMED8Q6PL24 325 aaPredicted RBP23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 DPP8Q6V1X1 898 aaPredicted RBP23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 C10orf71Q711Q0 1435 aa23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TIAM2Q8IVF5 1701 aa23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 ST3GAL1Q11201 340 aa23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TBC1D10CQ8IV04 446 aa23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 AGXT2Q9BYV1 514 aa23.31■■□□□ 1.32
TNFRSF1A-201ENST00000162749 DYNLL1P63167 89 aaKnown RBP23.3■■□□□ 1.32
TNFRSF1A-201ENST00000162749 SDR42E1Q8WUS8 393 aa23.3■■□□□ 1.32
TNFRSF1A-201ENST00000162749 NACAP1Q9BZK3 213 aa23.3■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TMX4Q9H1E5 349 aaPredicted RBP23.3■■□□□ 1.32
TNFRSF1A-201ENST00000162749 KIF13BQ9NQT8 1826 aa23.3■■□□□ 1.32
TNFRSF1A-201ENST00000162749 LDHBP07195 334 aaKnown RBP23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 NUCB2P80303 420 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 DZIP1Q86YF9 867 aaKnown RBP23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 CCDC83Q8IWF9 413 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 IGSF3O75054 1194 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 GRIK5Q16478 980 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 CHST3Q7LGC8 479 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 MB21D2Q8IYB1 491 aaPredicted RBP23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 NCOA7Q8NI08 942 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 BRF1Q92994 677 aa23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.29■■□□□ 1.32
TNFRSF1A-201ENST00000162749 RIMBP2O15034 1052 aa23.28■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TDO2P48775 406 aa23.28■■□□□ 1.32
TNFRSF1A-201ENST00000162749 NECAB1Q8N987 351 aa23.28■■□□□ 1.32
TNFRSF1A-201ENST00000162749 CNKSR1Q969H4 720 aa23.28■■□□□ 1.32
TNFRSF1A-201ENST00000162749 AATFQ9NY61 560 aaKnown RBP eCLIP23.28■■□□□ 1.32
TNFRSF1A-201ENST00000162749 CDK5RAP2Q96SN8 1893 aa23.27■■□□□ 1.32
TNFRSF1A-201ENST00000162749 TRAK2O60296 914 aa23.27■■□□□ 1.32
TNFRSF1A-201ENST00000162749 FGD1P98174 961 aa23.27■■□□□ 1.32
TNFRSF1A-201ENST00000162749 RALYLQ86SE5 291 aaKnown RBP23.27■■□□□ 1.32
TNFRSF1A-201ENST00000162749 ZC3H12CQ9C0D7 883 aaKnown RBP23.27■■□□□ 1.32
TNFRSF1A-201ENST00000162749 FBXL16Q8N461 479 aa23.27■■□□□ 1.31
TNFRSF1A-201ENST00000162749 COA1Q9GZY4 146 aa23.27■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms