RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MAFIPQ8WZ33 124 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 DLX4Q92988 240 aaPredicted RBP14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 MS4A10Q96PG2 267 aa14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 ALX4Q9H161 411 aaPredicted RBP14.73□□□□□ -0.05
CCDC28A-203ENST00000617445 SAP30O75446 220 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 DUTP33316 252 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 SCAND1P57086 179 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 ACSM6Q6P461 480 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 TEX45Q8NA69 505 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 BVESQ8NE79 360 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 WWC2-AS2Q96NR7 200 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 ZNF355PQ9NSJ1 428 aa14.72□□□□□ -0.05
CCDC28A-203ENST00000617445 IGHV4OR15-8A0A075B7B6 117 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 A0A087WW49 117 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 C13orf42A0A1B0GVH6 325 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 IGHV3-11P01762 117 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 SLURP1P55000 103 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 VMA21Q3ZAQ7 101 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 ZNF773Q6PK81 442 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 OR6Q1Q8NGQ2 317 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 OSR1Q8TAX0 266 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 DDB2Q92466 427 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 ST6GALNAC5Q9BVH7 336 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 RANGRFQ9HD47 186 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 DAPK2Q9UIK4 370 aa14.71□□□□□ -0.05
CCDC28A-203ENST00000617445 LY86O95711 162 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 ZP3P21754 424 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 UBE2KP61086 200 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 SSBP2P81877 361 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 PJVKQ0ZLH3 352 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 SFXN4Q6P4A7 337 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 CNIH2Q6PI25 160 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 ZNF645Q8N7E2 425 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 C5orf30Q96GV9 206 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 ELOVL1Q9BW60 279 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 OR2W1Q9Y3N9 320 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 SMAD5-AS1Q9Y6J3 95 aa14.7□□□□□ -0.06
CCDC28A-203ENST00000617445 IGKV1D-8A0A087WSZ0 117 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 SMIM30A4D0T7 59 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 SRRM4A7MD48 611 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 CREBL2O60519 120 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 HLA-DQB1P01920 261 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 SNRPBP14678 240 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 AADACP22760 399 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 OR5T1Q8NG75 326 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 OR4C12Q96R67 309 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 ELF5Q9UKW6 265 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 PRELID3BQ9Y3B1 194 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 DNAH9Q9NYC9 4486 aa14.69□□□□□ -0.06
CCDC28A-203ENST00000617445 TMEM127O75204 238 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 CRYZL1O95825 349 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 CD36P16671 472 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 SDC2P34741 201 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 GNG2P59768 71 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 PRSS8Q16651 343 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 USMG5Q96IX5 58 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 TINAGL1Q9GZM7 467 aaPredicted RBP14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 RHBDL2Q9NX52 303 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 ETV7Q9Y603 341 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 U3KQK5 164 aa14.68□□□□□ -0.06
CCDC28A-203ENST00000617445 LINC00473A8K010 186 aa14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 KCTD21Q4G0X4 260 aa14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 LGALS14Q8TCE9 139 aa14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 OR51E2Q9H255 320 aa14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 ANXA10Q9UJ72 324 aa14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 MRPS7Q9Y2R9 242 aaKnown RBP14.67□□□□□ -0.06
CCDC28A-203ENST00000617445 STAB2Q8WWQ8 2551 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 A0A0A6YYH2 397 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 TMEM235A6NFC5 223 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 MSGN1A6NI15 193 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 A6NJ64 397 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 NUDCD2Q8WVJ2 157 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 PHB2Q99623 299 aa14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 HSD17B10Q99714 261 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 RBMX2Q9Y388 322 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-203ENST00000617445 ACTL6BO94805 426 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 GP9P14770 177 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 SPNP16150 400 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 NFYAP23511 347 aaPredicted RBP14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 CDK10Q15131 360 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 TNXAQ16473 311 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 MRGPRG-AS1Q2M3A8 158 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 KCTD9Q7L273 389 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 OVCH2Q7RTZ1 564 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 MMD2Q8IY49 270 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 DCUN1D5Q9BTE7 237 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 COA4Q9NYJ1 87 aa14.65□□□□□ -0.06
CCDC28A-203ENST00000617445 OR9G9P0C7N8 305 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 MXD1Q05195 221 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 KLF5Q13887 457 aaPredicted RBP14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 TATDN3Q17R31 274 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 ZNF343Q6P1L6 599 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 SRSF12Q8WXF0 261 aaKnown RBP14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 SPIN2AQ99865 258 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 SPIN2BQ9BPZ2 258 aa14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 PEF1Q9UBV8 284 aaKnown RBP14.64□□□□□ -0.07
CCDC28A-203ENST00000617445 LOC100506127A0A0U1RQW1 187 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 J3QRK9 145 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 MPPED1O15442 326 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 SSX5O60225 188 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms