RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 RPEL1Q2QD12 228 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 VMA21Q3ZAQ7 101 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 HAPLN4Q86UW8 402 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 LAX1Q8IWV1 398 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 CABLES2Q9BTV7 478 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 VCX3BQ9H321 246 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 ACOT13Q9NPJ3 140 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 SDHAF2Q9NX18 166 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 NKX1-2Q9UD57 310 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 AK6Q9Y3D8 172 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 V9GY05 133 aa13.59□□□□□ -0.23
SHKBP1-227ENST00000602011 TRBV6-7A0A0A0MS04 114 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 GADD45AP24522 165 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 SSBP2P81877 361 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 IRF3Q14653 427 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 TMEM91Q6ZNR0 172 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 BVESQ8NE79 360 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 OSR1Q8TAX0 266 aaPredicted RBP13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 TMEM203Q969S6 136 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 RAB3CQ96E17 227 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 PHB2Q99623 299 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 KCNK15Q9H427 330 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 COA4Q9NYJ1 87 aa13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 RBM7Q9Y580 266 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-227ENST00000602011 MSGN1A6NI15 193 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 FAM223BA6NKX1 122 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 ATP6V1G2O95670 118 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 CSN3P07498 182 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 OR9G9P0C7N8 305 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 MECP2P51608 486 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 LINC00205P59089 165 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 UBE2KP61086 200 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 PJVKQ0ZLH3 352 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 MLLT11Q13015 90 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 PLAC9Q5JTB6 97 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 FAM223AQ8IWN6 122 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 THAP7Q9BT49 309 aaPredicted RBP13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 OR2D2Q9H210 308 aa13.57□□□□□ -0.24
SHKBP1-227ENST00000602011 TNCP24821 2201 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 SHISA3A0PJX4 238 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 PDCD5O14737 125 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 BET1O15155 118 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 ACTL6BO94805 426 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 DYRK1AQ13627 763 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 Q6ZS49 121 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 SLC25A42Q86VD7 318 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 ADAD2Q8NCV1 583 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 GFI1Q99684 422 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 SPIN2AQ99865 258 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 SPIN2BQ9BPZ2 258 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 DUSP21Q9H596 190 aa13.56□□□□□ -0.24
SHKBP1-227ENST00000602011 METTL21EPA6NDL7 271 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 TUSC2O75896 110 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 SLC22A5O76082 557 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 FCGR3AP08637 254 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 HSMCR30P0CW71 290 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 CALRP27797 417 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 ATP5G2Q06055 141 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 PRSS8Q16651 343 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 KCTD12Q96CX2 325 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 GINS4Q9BRT9 223 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 SLC2A8Q9NY64 477 aa13.55□□□□□ -0.24
SHKBP1-227ENST00000602011 SRRM4A7MD48 611 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 MPPED1O15442 326 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 RGS10O43665 173 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 CTXN2P0C2S0 81 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 GSTT2P0CG29 244 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 GSTT2BP0CG30 244 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 RAB6AP20340 208 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 TALDO1P37837 337 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 MAP2K4P45985 399 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 IGSF11Q5DX21 431 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 NECAP1Q8NC96 275 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 OR10R2Q8NGX6 335 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 KCNK7Q9Y2U2 307 aa13.54□□□□□ -0.24
SHKBP1-227ENST00000602011 TRBV9A0A0B4J1U6 114 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TRAV1-2A0A0B4J238 106 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TMEM272A0A1B0GTI8 110 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 JTBO76095 146 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TPPPO94811 219 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 DUTP33316 252 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TNXAQ16473 311 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 LINC00322Q6ZN03 302 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 MMD2Q8IY49 270 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TTC9CQ8N5M4 171 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 SRSF12Q8WXF0 261 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 DDB2Q92466 427 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 TECRQ9NZ01 308 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 PRELID3BQ9Y3B1 194 aa13.53□□□□□ -0.24
SHKBP1-227ENST00000602011 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 SNRPBP14678 240 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 CLDN12P56749 244 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 RPS25P62851 125 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 RHOGP84095 191 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 PRSS48Q7RTY5 328 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 NRG4Q8WWG1 115 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 MGLLQ99685 303 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 CEPT1Q9Y6K0 416 aa13.52□□□□□ -0.25
SHKBP1-227ENST00000602011 RAB27BO00194 218 aa13.51□□□□□ -0.25
SHKBP1-227ENST00000602011 CRYZL1O95825 349 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms