RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C19orf25Q9UFG5 118 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 IGLV3-32A0A0A0MS00 114 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 IGLC7A0M8Q6 106 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 H7C1C5 153 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 SDCBPO00560 298 aaPredicted RBP4.46□□□□□ -1.7
USP28-213ENST00000544967 MPPED1O15442 326 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 SNAI2O43623 268 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 ZNF737O75373 536 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 GYPAP02724 150 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 PGCP20142 388 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 OR3A4PP47883 348 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 LHX2P50458 406 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 RRADP55042 308 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 HBG1P69891 147 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 HBG2P69892 147 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 CRIP3Q6Q6R5 217 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 MUC15Q8N387 334 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 TMEM217Q8N7C4 229 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 MDS2Q8NDY4 140 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 PLPPR1Q8TBJ4 325 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 TMEM204Q9BSN7 226 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 PARLQ9H300 379 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 ZNF665Q9H7R5 613 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 SMPXQ9UHP9 88 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 NCKAP5O14513 1909 aa4.46□□□□□ -1.7
USP28-213ENST00000544967 FRG2CA6NGY1 282 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 CBY3A6NI87 242 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 FAM90A9PA6NNJ1 464 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 A8MZ25 164 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 H0Y980 276 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF253O75346 499 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 HYPMO75409 117 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 HLA-DRB1P01911 266 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 EGR1P18146 543 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF726P1Q15940 193 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 DEFB134Q4QY38 66 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 C9orf135Q5VTT2 229 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF324BQ6AW86 544 aaPredicted RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 FAM71F2Q6NXP2 309 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 CST9LQ9H4G1 147 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 COA3Q9Y2R0 106 aaPredicted RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 CHD8Q9HCK8 2581 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 SPTBN4Q9H254 2564 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 LRRC3CA6NJW4 275 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 CEBPZOSA8MTT3 80 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF814B7Z6K7 855 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 LMX1BO60663 402 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 PAX9P55771 341 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 MFAP5Q13361 173 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 OR4N5Q8IXE1 308 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 SHISA5Q8N114 240 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF525Q8N782 197 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZIC4Q8N9L1 334 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 MRPL30Q8TCC3 161 aaKnown RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 THOC3Q96J01 351 aaKnown RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 GNB1LQ9BYB4 327 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 OR10A5Q9H207 317 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 BANF2Q9H503 90 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZNF581Q9P0T4 197 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 TP53TG3Q9ULZ0 132 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ARL2-SNX15V9GYD0 113 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 EP300Q09472 2414 aaPredicted RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 DMXL2Q8TDJ6 3036 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 DOCK10Q96BY6 2186 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 NKX2-6A6NCS4 301 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZFP92A6NM28 416 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ZZEF1O43149 2961 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 GPX1P07203 203 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 CD55P08174 381 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 TSPOP30536 169 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 LINC00310P59036 64 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 HERV-K104P61576 105 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 ARG2P78540 354 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 SRSF6Q13247 344 aaKnown RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 KISS1Q15726 138 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 SPATA45Q537H7 98 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 MARCH3Q86UD3 253 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 CXorf67Q86X51 503 aaPredicted RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 CALHM1Q8IU99 346 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 TMEM123Q8N131 208 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 OR4C3Q8NH37 302 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 FAM222BQ8WU58 562 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 TMEM45BQ96B21 275 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 MMABQ96EY8 250 aaPredicted RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 HARBI1Q96MB7 349 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 WDR61Q9GZS3 305 aaKnown RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 KCNIP2Q9NS61 270 aa4.45□□□□□ -1.7
USP28-213ENST00000544967 MCTS1Q9ULC4 181 aaKnown RBP4.45□□□□□ -1.7
USP28-213ENST00000544967 PHF1O43189 567 aaPredicted RBP4.44□□□□□ -1.7
USP28-213ENST00000544967 SMIM17P0DL12 118 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 GP1BBP13224 206 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 FAHP16930 419 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ZNF17P17021 662 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 RPS27P42677 84 aaKnown RBP4.44□□□□□ -1.7
USP28-213ENST00000544967 BIDP55957 195 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 RASL11AQ6T310 242 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 Q6ZS92 163 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ZNF695Q8IW36 515 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR4S2Q8NH73 311 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 APH1AQ96BI3 265 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms