RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SPATA12Q7Z6I5 190 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 GPHB5Q86YW7 130 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 OR51D1Q8NGF3 324 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 OR11H2Q8NH07 326 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 RAB2BQ8WUD1 216 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 ITFG2Q969R8 447 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 GNPNAT1Q96EK6 184 aaPredicted RBP3.54□□□□□ -1.84
NUP54-215ENST00000514313 SFRP2Q96HF1 295 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 C8orf76Q96K31 380 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 CCDC42Q96M95 316 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 CCL13Q99616 98 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 ANAPC10Q9UM13 185 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 LSM5Q9Y4Y9 91 aaKnown RBP3.54□□□□□ -1.84
NUP54-215ENST00000514313 PXMP4Q9Y6I8 212 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 RPS17P08708 135 aaKnown RBP3.53□□□□□ -1.84
NUP54-215ENST00000514313 RAB5BP61020 215 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 TNFRSF9Q07011 255 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 FOXF1Q12946 379 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 LGALS9BQ3B8N2 356 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 LGALS9CQ6DKI2 356 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 C20orf166-AS1Q96NR2 134 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 LRRC19Q9H756 370 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 CXorf21Q9HAI6 301 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 TXNL4BQ9NX01 149 aaKnown RBP3.53□□□□□ -1.84
NUP54-215ENST00000514313 COQ4Q9Y3A0 265 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 DSCAMO60469 2012 aa3.53□□□□□ -1.84
NUP54-215ENST00000514313 MDFIC2A0A1B0GVS7 189 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 GRIFINA4D1Z8 144 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 OR5K4A6NMS3 321 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 DISC1C4P0D8 188 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 IGHV1-69P01742 117 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 IFNA16P05015 189 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 UCHL3P15374 230 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 MARCKSL1P49006 195 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 CEBPGP53567 150 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 OR2F1Q13607 317 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 SMARCD3Q6STE5 483 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 UMODL1-AS1Q8N2C9 162 aa3.52□□□□□ -1.85
NUP54-215ENST00000514313 C9JCJ5 164 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 GOLGA6L19H0YKK7 550 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 COX7A2LO14548 114 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 HIST2H3PS2Q5TEC6 136 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 C2orf91Q6ZV80 131 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 CNEP1R1Q8N9A8 125 aa3.51□□□□□ -1.85
NUP54-215ENST00000514313 KLK5Q9Y337 293 aaPredicted RBP3.51□□□□□ -1.85
NUP54-215ENST00000514313 PLXNB1O43157 2135 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 DOCK6Q96HP0 2047 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 TRPM6Q9BX84 2022 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 A0A0J9YX75 114 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 GZMBP10144 247 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 TBPL1P62380 186 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 HIST3H3Q16695 136 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 TCF24Q7RTU0 167 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 DEFB125Q8N687 156 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 MMACHCQ9Y4U1 282 aa3.5□□□□□ -1.85
NUP54-215ENST00000514313 A0A087WUU8 490 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 OR4C45A6NMZ5 311 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 ODF3BA8MYP8 253 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 C3orf84H3BNL1 204 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 H3BPC8 53 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 UBFD1O14562 309 aaKnown RBP3.49□□□□□ -1.85
NUP54-215ENST00000514313 NDUFB2O95178 105 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 ZNF140P52738 457 aaPredicted RBP3.49□□□□□ -1.85
NUP54-215ENST00000514313 TNFAIP6P98066 277 aaPredicted RBP3.49□□□□□ -1.85
NUP54-215ENST00000514313 C5orf46Q6UWT4 87 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 TRAPPC5Q8IUR0 188 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 TMEM86BQ8N661 226 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 SGMS2Q8NHU3 365 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 IMP4Q96G21 291 aaKnown RBP3.49□□□□□ -1.85
NUP54-215ENST00000514313 NMNAT3Q96T66 252 aa3.49□□□□□ -1.85
NUP54-215ENST00000514313 SNAPC4Q5SXM2 1469 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 IGHV3-15A0A0B4J1V0 119 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 RPP14O95059 124 aaKnown RBP3.48□□□□□ -1.85
NUP54-215ENST00000514313 BLVRBP30043 206 aaPredicted RBP3.48□□□□□ -1.85
NUP54-215ENST00000514313 GABRA2P47869 451 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 GABRA4P48169 554 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 GZMMP51124 257 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 RBM11P57052 281 aaKnown RBP3.48□□□□□ -1.85
NUP54-215ENST00000514313 TAS2R30P59541 319 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 FAM201AQ5SY85 155 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.48□□□□□ -1.85
NUP54-215ENST00000514313 ALKAL1Q6UXT8 129 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 OR4C16Q8NGL9 310 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 OR2T4Q8NH00 348 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 OR51V1Q9H2C8 321 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 GPR84Q9NQS5 396 aa3.48□□□□□ -1.85
NUP54-215ENST00000514313 FAM228BP0C875 321 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 GZMHP20718 246 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 LSM6P62312 80 aaKnown RBP3.47□□□□□ -1.85
NUP54-215ENST00000514313 FKBP1AP62942 108 aaKnown RBP3.47□□□□□ -1.85
NUP54-215ENST00000514313 GNA12Q03113 381 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 AESQ08117 197 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 FABP9Q0Z7S8 132 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 PMAIP1Q13794 54 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 LHFPL5Q8TAF8 219 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 FGF13Q92913 245 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 SLC35B4Q969S0 331 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 TUBA4BQ9H853 241 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 CCL26Q9Y258 94 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms