RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TBC1D26Q86UD7 250 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 OR4C13Q8NGP0 309 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 FLYWCH2Q96CP2 140 aaKnown RBP23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 NCBP2LA6PVI3 153 aaKnown RBP23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 LYRM1O43325 122 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 F2RL1P55085 397 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 OR4S2Q8NH73 311 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 TAF15Q92804 592 aaKnown RBP eCLIP23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 HARBI1Q96MB7 349 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 C5orf66Q9H5L9 145 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 LIN7CQ9NUP9 197 aaKnown RBP23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 TBC1D24Q9ULP9 559 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 VSIG4Q9Y279 399 aa23.61■■□□□ 1.37
LIMCH1-211ENST00000509638 CRYBA1P05813 215 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 KIR2DS2P43631 304 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 BRWD1-AS2P59051 145 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 RND3P61587 244 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 IFITM3Q01628 133 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 OR8H1Q8NGG4 311 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 NPFFR1Q9GZQ6 430 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 COPZ2Q9P299 210 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 GPR132Q9UNW8 380 aa23.6■■□□□ 1.37
LIMCH1-211ENST00000509638 RAMP3O60896 148 aa23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 RPS16P62249 146 aaKnown RBP23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 RBMS2Q15434 407 aaKnown RBP23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 SPAG16Q8N0X2 631 aa23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 C5orf56Q8N8D9 126 aa23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 POC5Q8NA72 575 aa23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 RTBDNQ9BSG5 229 aaPredicted RBP23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 PLSCR3Q9NRY6 295 aa23.59■■□□□ 1.37
LIMCH1-211ENST00000509638 M0QZK8 103 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 NBR2O15453 112 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 TMEM177Q53S58 311 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 CCDC71LQ8N9Z2 235 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 SCGB3A2Q96PL1 93 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 SLC25A21Q9BQT8 299 aaPredicted RBP23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 C1RLQ9NZP8 487 aa23.58■■□□□ 1.37
LIMCH1-211ENST00000509638 SHOXO15266 292 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 FGF16O43320 207 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 AMY1AP04745 511 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 F2RP25116 425 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 RELBQ01201 579 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 ASAH1Q13510 395 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 KRTAP24-1Q3LI83 254 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 RNF5Q99942 180 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 MPPED1O15442 326 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 C11orf88Q6PI97 169 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 FAM71E2Q8N5Q1 922 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 Q8N9W7 124 aa23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 TSNAXQ99598 290 aaKnown RBP23.57■■□□□ 1.36
LIMCH1-211ENST00000509638 SH2D7A6NKC9 451 aaPredicted RBP23.56■■□□□ 1.36
LIMCH1-211ENST00000509638 RBFOX2O43251 390 aaKnown RBP eCLIP23.56■■□□□ 1.36
LIMCH1-211ENST00000509638 NPBQ8NG41 125 aa23.56■■□□□ 1.36
LIMCH1-211ENST00000509638 OSR1Q8TAX0 266 aaPredicted RBP23.56■■□□□ 1.36
LIMCH1-211ENST00000509638 KIAA1456Q9P272 454 aa23.56■■□□□ 1.36
LIMCH1-211ENST00000509638 NDUFB6O95139 128 aa23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 NDUFA3O95167 84 aa23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 BLCAPP62952 87 aa23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 TMED4Q7Z7H5 227 aa23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 ADAD2Q8NCV1 583 aaKnown RBP23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 CD300LFQ8TDQ1 290 aa23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 RANBP3Q9H6Z4 567 aaPredicted RBP23.55■■□□□ 1.36
LIMCH1-211ENST00000509638 SPDEFO95238 335 aa23.54■■□□□ 1.36
LIMCH1-211ENST00000509638 VSIG10L2P0DP72 767 aa23.54■■□□□ 1.36
LIMCH1-211ENST00000509638 RRHO14718 337 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 SLC25A17O43808 307 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 IGLV2-23P01705 113 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 LGALS7P47929 136 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 Q6ZSV7 163 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 TCTEX1D1Q8N7M0 179 aa23.53■■□□□ 1.36
LIMCH1-211ENST00000509638 SRRM4A7MD48 611 aaKnown RBP23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 H0Y980 276 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 S1PR2O95136 353 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 RAG2P55895 527 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 PLGLAQ15195 96 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 PSG5Q15238 335 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 C5orf64Q2M2E5 130 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 TMEM230Q96A57 120 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 TP53RKQ96S44 253 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 RASL11BQ9BPW5 248 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 FBXL15Q9H469 300 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 ZNF702PQ9H963 129 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 METTL1Q9UBP6 276 aaKnown RBP23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 COL6A5A8TX70 2615 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 TEX13DA0A0J9YY54 714 aaPredicted RBP23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 CRYM-AS1A6NIL9 109 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 SLC6A1P30531 599 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 MZT2BQ6NZ67 158 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 Q6ZS46 218 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 NAA60Q9H7X0 242 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 TPSG1Q9NRR2 321 aa23.52■■□□□ 1.36
LIMCH1-211ENST00000509638 C3orf85A0A1B0GTC6 90 aa23.51■■□□□ 1.35
LIMCH1-211ENST00000509638 AKR1C4P17516 323 aa23.51■■□□□ 1.35
LIMCH1-211ENST00000509638 VKORC1L1Q8N0U8 176 aa23.51■■□□□ 1.35
LIMCH1-211ENST00000509638 PRSS22Q9GZN4 317 aa23.51■■□□□ 1.35
LIMCH1-211ENST00000509638 PLXNB1O43157 2135 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 NDUFA7O95182 113 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 HPRT1P00492 218 aa23.5■■□□□ 1.35
LIMCH1-211ENST00000509638 HKR1P10072 659 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms