RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ATP23Q9Y6H3 246 aa9.18□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CENPEQ02224 2701 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ZNF716A6NP11 495 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 J3QR89 54 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 WT1P19544 449 aaPredicted RBP9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 LHX2P50458 406 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 GNG3P63215 75 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ZNF816Q0VGE8 651 aaPredicted RBP9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 HLA-DRB5Q30154 266 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 FAM201AQ5SY85 155 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ASPHD2Q6ICH7 369 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PAQR4Q8N4S7 273 aaPredicted RBP9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ABHD5Q8WTS1 349 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RSG1Q9BU20 258 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SCNM1Q9BWG6 230 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ZFP30Q9Y2G7 519 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 M0R1X1 148 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ST6GALNAC3Q8NDV1 305 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 DIRC2Q96SL1 478 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MANBALQ9NQG1 85 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR6C3Q9NZP0 311 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SPRR3Q9UBC9 169 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ARFGEF3Q5TH69 2177 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 LILRA1O75019 489 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PITX3O75364 302 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SCTP09683 121 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CLDN18P56856 261 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CCL8P80075 99 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MMDQ15546 238 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ERASQ7Z444 233 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 HIPK2Q9H2X6 1198 aa9.17□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CLEC18AA5D8T8 446 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 WNT9BO14905 357 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PDCD6O75340 191 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CDS2O95674 445 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 FSTP19883 344 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SRSF4Q08170 494 aaKnown RBP9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 LDLRAD2Q5SZI1 272 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CLEC18CQ8NCF0 446 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR52M1Q8NGK5 317 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 NUDT11Q96G61 164 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 EPG5Q9HCE0 2579 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 IGKV1D-8A0A087WSZ0 117 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ISG15P05161 165 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MDH2P40926 338 aaKnown RBP9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MEF2BQ02080 365 aaPredicted RBP9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RAB31Q13636 194 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ZNF718Q3SXZ3 478 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 FAM214BQ7L5A3 538 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR2D3Q8NGH3 330 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CCL17Q92583 94 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ENY2Q9NPA8 101 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CIDEAO60543 219 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 IGHMP01871 453 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 IER3P46695 156 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 AESQ08117 197 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 TEX38Q6PEX7 206 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 S100A7AQ86SG5 101 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SMIM12Q96EX1 92 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PARLQ9H300 379 aa9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 USP9YO00507 2555 aaPredicted RBP9.16□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SNURFLB1AK76 121 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PAGE4O60829 102 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 PRB3Q04118 309 aaPredicted RBP9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 FAM27E3Q08E93 113 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RPRMLQ8N4K4 120 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR10G8Q8NGN5 311 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 LAMTOR2Q9Y2Q5 125 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 TNFSF4P23510 183 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ICAM4Q14773 271 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RTP5Q14D33 572 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ATOH7Q8N100 152 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 SCCPDHQ8NBX0 429 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR10P1Q8NGE3 313 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 OR1L6Q8NGR2 347 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 BCL2L2Q92843 193 aaPredicted RBP9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 MOB3AQ96BX8 217 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 ABHD17AQ96GS6 310 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 RAB40CQ96S21 281 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 CCL28Q9NRJ3 127 aa9.15□□□□□ -0.94
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYD4 124 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 LOC102723971A0A1B0GUV8 181 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 C11orf94C9JXX5 98 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SYNGR3O43761 229 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ZNF883P0CG24 379 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 FFAR4Q5NUL3 377 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR10G4Q8NGN3 311 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR10G9Q8NGN4 311 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR10G7Q8NGN6 311 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TUBD1Q9UJT1 453 aa9.15□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TRBV24-1A0A075B6N3 115 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 A0A1B0GU03 582 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 Q56UQ5 140 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CXorf66Q5JRM2 361 aaPredicted RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 LRRC29Q8WV35 223 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM230Q96A57 120 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RTBDNQ9BSG5 229 aaPredicted RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IL19Q9UHD0 177 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CD33P20138 364 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 BRS3P32247 399 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms