RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 SAA4P35542 130 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 THBS3P49746 956 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 LGALS4P56470 323 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 UBE2MP61081 183 aaKnown RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 DHRS2Q13268 280 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 ABCA11PQ4W5N1 156 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 FBLN7Q53RD9 439 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 FAM71F2Q6NXP2 309 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 C9orf139Q6ZV77 190 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 LYG2Q86SG7 212 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 TGIF2LXQ8IUE1 241 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 SGPP2Q8IWX5 399 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 SELENOHQ8IZQ5 122 aaKnown RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 SPAG16Q8N0X2 631 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 TCTEX1D1Q8N7M0 179 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 LRTM2Q8N967 370 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 LHFPL5Q8TAF8 219 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 ZNF431Q8TF32 576 aaPredicted RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 MITD1Q8WV92 249 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 WFDC12Q8WWY7 111 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 SEC22CQ9BRL7 303 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 MRPL20Q9BYC9 149 aaKnown RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 TMEM222Q9H0R3 208 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 NAA60Q9H7X0 242 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 PLSCR3Q9NRY6 295 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 FAM212BQ9NTI7 297 aaPredicted RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 TMEM160Q9NX00 188 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 PRR13Q9NZ81 148 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 SHPKQ9UHJ6 478 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 CELSR1Q9NYQ6 3014 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 AKAP9Q99996 3911 aa4.78□□□□□ -1.65
USP39-213ENST00000467885 IGHV3-72A0A0B4J1Y9 119 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 DBX1A6NMT0 343 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 VGLL3A8MV65 326 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 TIMM23O14925 209 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 RBFOX2O43251 390 aaKnown RBP eCLIP4.77□□□□□ -1.65
USP39-213ENST00000467885 PRAF2O60831 178 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 FBXO24O75426 580 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 B3GALNT1O75752 331 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 SCGB1D2O95969 90 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 HPRT1P00492 218 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 IFNA2P01563 188 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 IGLV2-23P01705 113 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 IGKV1-16P04430 117 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CRYGBP07316 175 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 OR5AC1P0C628 307 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 P0C879 139 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CD24P25063 80 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 IL3RAP26951 378 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CEACAM3P40198 252 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 DYNLT3P51808 116 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 F2RL1P55085 397 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 TAS2R31P59538 309 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 IL15RAQ13261 267 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 SLC9A3R2Q15599 337 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 TATDN3Q17R31 274 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 MRGPRG-AS1Q2M3A8 158 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 DEFB112Q30KQ8 113 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 TMEM177Q53S58 311 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 GPR157Q5UAW9 335 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 Q6ZRM9 215 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 LYZL2Q7Z4W2 148 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 MOB3BQ86TA1 216 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CADM3Q8N126 398 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 OR8H3Q8N146 312 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 C12orf45Q8N5I9 185 aaPredicted RBP4.77□□□□□ -1.65
USP39-213ENST00000467885 Q8N6K4 173 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CCDC71LQ8N9Z2 235 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 OR51H1Q8NH63 302 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CD300LFQ8TDQ1 290 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CHAC2Q8WUX2 184 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 RPEQ96AT9 228 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 WDR89Q96FK6 387 aaPredicted RBP4.77□□□□□ -1.65
USP39-213ENST00000467885 SEC22AQ96IW7 307 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 ADTRPQ96IZ2 230 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 ZNF48Q96MX3 618 aaPredicted RBP4.77□□□□□ -1.65
USP39-213ENST00000467885 RNF5Q99942 180 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 OR51J1Q9H342 316 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 PLEKHA2Q9HB19 425 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 KCNS2Q9ULS6 477 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 PRELID3BQ9Y3B1 194 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 AMMECR1Q9Y4X0 333 aaPredicted RBP4.77□□□□□ -1.65
USP39-213ENST00000467885 ALG5Q9Y673 324 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 DOCK11Q5JSL3 2073 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 HIVEP1P15822 2718 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 CSPG4Q6UVK1 2322 aa4.77□□□□□ -1.65
USP39-213ENST00000467885 DSCAML1Q8TD84 2053 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 MYO9AB2RTY4 2548 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 TRAV40A0A0B4J280 105 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 A0A0G2JRQ6 117 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 HMX3A6NHT5 357 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 RNF212BA8MTL3 300 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 H0Y980 276 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 FCN1O00602 326 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 PAX4O43316 350 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 FCGR3BO75015 233 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 OR2A4O95047 310 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 VENTXO95231 258 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 KRASP01116 189 aa4.76□□□□□ -1.65
USP39-213ENST00000467885 IGKV1-5P01602 117 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms