RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR10R2Q8NGX6 335 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 FGFBP2Q9BYJ0 223 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR51B2Q9Y5P1 312 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 PUS1Q9Y606 427 aaKnown RBP eCLIP3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF407Q9C0G0 2248 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TRAV8-1A0A0A6YYK1 113 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TRAV26-2A0A0B4J265 109 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 F8W735 103 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 CCL24O00175 119 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TNFSF12O43508 249 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 EIF3GO75821 320 aaKnown RBP eCLIP3.45□□□□□ -1.86
USH2A-202ENST00000366942 CA2P00918 260 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 HSPB1P04792 205 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 MPV17L2Q567V2 206 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TCF24Q7RTU0 167 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF680Q8NEM1 530 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 FAM216AQ8WUB2 273 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ALG14Q96F25 216 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR8B4Q96RC9 309 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ATOH8Q96SQ7 321 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF2Q9BSG1 426 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 FN1P02751 2386 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 A8MWL6 223 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CDAP32320 146 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 HLA-DRB3P79483 266 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 EFNB1P98172 346 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 VAX1Q5SQQ9 334 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 C1orf220Q5T0J3 134 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 HIST2H3PS2Q5TEC6 136 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 LCN15Q6UWW0 184 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TMEM144Q7Z5S9 345 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SUMF2Q8NBJ7 301 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR8A1Q8NGG7 326 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ALX4Q9H161 411 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 BANF2Q9H503 90 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 DNAJC15Q9Y5T4 150 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SLX4Q8IY92 1834 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 TOGARAM1Q9Y4F4 1720 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 IGLL5B9A064 214 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 INMT-MINDY4F8WBC2 141 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RHODO00212 210 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 GATCO43716 136 aaKnown RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 DNAL4O96015 105 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SOD3P08294 240 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RHOGP84095 191 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 PPP1R8Q12972 351 aaKnown RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 IGSF11Q5DX21 431 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 C10orf128Q5T292 105 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 CLEC19AQ6UXS0 136 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SAXO1Q8IYX7 474 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 MYOZ3Q8TDC0 251 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 UCN2Q96RP3 112 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 NAA60Q9H7X0 242 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ZNF430Q9H8G1 570 aaPredicted RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 ZNF586Q9NXT0 402 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 NOTCH3Q9UM47 2321 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 TRBV7-1A0A0A6YYK4 115 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RER1O15258 196 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 FOXS1O43638 330 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 LY6G6DO95868 133 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ZNF14P17017 642 aaPredicted RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 GPR183P32249 361 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 PRR27Q6MZM9 219 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 BRD3OSQ6XYD6 125 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 C11orf42Q8N5U0 333 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 C11orf45Q8TAV5 145 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RHOVQ96L33 236 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SLX1AQ9BQ83 275 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 TRAF4Q9BUZ4 470 aaPredicted RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 NDUFB11Q9NX14 153 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RPUSD1Q9UJJ7 312 aaKnown RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 KNDC1Q76NI1 1749 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 IGLV3-16A0A075B6K0 115 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 TMEM272A0A1B0GTI8 110 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 TMEM250H0YL14 139 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 M0R3E3 92 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 PLPP2O43688 288 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 CTAG2O75638 210 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 HIST1H1CP16403 213 aaKnown RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 FGF8P55075 233 aaPredicted RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 SLC10A2Q12908 348 aaPredicted RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 C1QL2Q7Z5L3 287 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 STPG2Q8N412 459 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ARRDC1Q8N5I2 433 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ZNF721Q8TF20 911 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ABHD14BQ96IU4 210 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SORT1Q99523 831 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 JPT2Q9H910 190 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 CACNG5Q9UF02 275 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 DTX4Q9Y2E6 619 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 PPLO60437 1756 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 A0A1B0GTL3 188 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ADARB2-AS1A8MUL3 147 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 H0Y8G0 127 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 FGF16O43320 207 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 GREM1O60565 184 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SNAP29O95721 258 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 MELTFP08582 738 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 CALCBP10092 127 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 RAB5CP51148 216 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms