RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 ATP5G3P48201 142 aa16.62■□□□□ 0.25
CRLF3-201ENST00000324238 ERVK11-1P61568 191 aa16.62■□□□□ 0.25
CRLF3-201ENST00000324238 OR5B12Q96R08 314 aa16.62■□□□□ 0.25
CRLF3-201ENST00000324238 P2RX4Q99571 388 aa16.62■□□□□ 0.25
CRLF3-201ENST00000324238 PITPNC1Q9UKF7 332 aa16.62■□□□□ 0.25
CRLF3-201ENST00000324238 CDX4O14627 284 aaPredicted RBP16.61■□□□□ 0.25
CRLF3-201ENST00000324238 ARFGEF3Q5TH69 2177 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 OR1P1Q8NH06 330 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 NPCDR1Q9BY65 106 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 TMEM242Q9NWH2 141 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 TRGV5A0A0B4J1U4 118 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 CD33P20138 364 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 HIPK2Q9H2X6 1198 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 SRD5A3Q9H8P0 318 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 HSPB7Q9UBY9 170 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 PCNX1Q96RV3 2341 aa16.61■□□□□ 0.25
CRLF3-201ENST00000324238 KLRC4-KLRK1H3BQV0 150 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 H2BFWTQ7Z2G1 175 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 ZNF114Q8NC26 417 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 COQ2Q96H96 371 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 QTRT1Q9BXR0 403 aaKnown RBP16.6■□□□□ 0.25
CRLF3-201ENST00000324238 MBNL3Q9NUK0 354 aaKnown RBP16.6■□□□□ 0.25
CRLF3-201ENST00000324238 FAM78BQ5VT40 261 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 TMEM183AQ8IXX5 376 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 ZNF645Q8N7E2 425 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 OR13A1Q8NGR1 328 aa16.6■□□□□ 0.25
CRLF3-201ENST00000324238 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.6■□□□□ 0.25
CRLF3-201ENST00000324238 NKX2-8O15522 239 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 MLNRO43193 412 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 ZNF709Q8N972 641 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 NINJ1Q92982 152 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 TRIB1Q96RU8 372 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 POLDIP2Q9Y2S7 368 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 CTXND1A0A1B0GTU2 59 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 PMS2P5A8MQ11 134 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 C11orf94C9JXX5 98 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 C1QTNF9P0C862 333 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 UBE2NP61088 152 aaKnown RBP16.59■□□□□ 0.25
CRLF3-201ENST00000324238 TGFBR3Q03167 851 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 PMS2P11Q13670 270 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 ZNF766Q5HY98 468 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 ZNF664Q8N3J9 261 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 ZPBPQ9BS86 351 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 TMEM147Q9BVK8 224 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 DDA1Q9BW61 102 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 NPIPB11E5RHQ5 1161 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 NDUFB4O95168 129 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 USF2Q15853 346 aaPredicted RBP16.59■□□□□ 0.25
CRLF3-201ENST00000324238 UTF1Q5T230 341 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 POLEQ07864 2286 aa16.59■□□□□ 0.25
CRLF3-201ENST00000324238 TSTD3H0UI37 97 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 CD46P15529 392 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 IGHV1-2P23083 117 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 TCF23Q7RTU1 214 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 KLF14Q8TD94 323 aaPredicted RBP16.58■□□□□ 0.24
CRLF3-201ENST00000324238 MISP3Q96FF7 219 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 TMEM30CPA0ZSE6 113 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 SP9P0CG40 484 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 NUBP1P53384 320 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 SOX8P57073 446 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 PKIAP61925 76 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 ZNF146Q15072 292 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 MOB1BQ7L9L4 216 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 ACTR3CQ9C0K3 210 aaPredicted RBP16.58■□□□□ 0.24
CRLF3-201ENST00000324238 CTDSP1Q9GZU7 261 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 WIPI2Q9Y4P8 454 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 TNCP24821 2201 aa16.58■□□□□ 0.24
CRLF3-201ENST00000324238 INTS1Q8N201 2190 aaKnown RBP16.58■□□□□ 0.24
CRLF3-201ENST00000324238 MSMO1Q15800 293 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 LEAP2Q969E1 77 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 IER2Q9BTL4 223 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 KLF13Q9Y2Y9 288 aaPredicted RBP16.57■□□□□ 0.24
CRLF3-201ENST00000324238 OR9G9P0C7N8 305 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 COX5AP20674 150 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 HCFC1P51610 2035 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 KALRNO60229 2985 aa16.57■□□□□ 0.24
CRLF3-201ENST00000324238 FCGR3BO75015 233 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 OR2T10Q8NGZ9 312 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 C11orf53Q8IXP5 236 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 TRAV3A0A0B4J244 114 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 HRASP01112 189 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 OR4A8P0C604 315 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 THBS3P49746 956 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 GNB1P62873 340 aa16.56■□□□□ 0.24
CRLF3-201ENST00000324238 NANOS1Q8WY41 292 aaKnown RBP16.56■□□□□ 0.24
CRLF3-201ENST00000324238 NEIL1Q96FI4 390 aaPredicted RBP16.56■□□□□ 0.24
CRLF3-201ENST00000324238 ZNF320A2RRD8 509 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 MARCH11A6NNE9 402 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 RNF212BA8MTL3 300 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 NUPR1O60356 82 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 CDC34P49427 236 aaPredicted RBP16.55■□□□□ 0.24
CRLF3-201ENST00000324238 MRPL41Q8IXM3 137 aaKnown RBP16.55■□□□□ 0.24
CRLF3-201ENST00000324238 TMEM256Q8N2U0 113 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 SSMEM1Q8WWF3 244 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 PLCE1Q9P212 2302 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 IFNA10P01566 189 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 JOSD1Q15040 202 aaPredicted RBP16.55■□□□□ 0.24
CRLF3-201ENST00000324238 REC114Q7Z4M0 266 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 ABHD12Q8N2K0 398 aa16.55■□□□□ 0.24
CRLF3-201ENST00000324238 TPRP12270 2363 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms