RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Lmx1bO88609 395 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 CtsaP16675 474 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gabrg3P27681 467 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Vmn1r236Q05A06 334 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rbp2Q08652 134 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Alkal2Q80UG6 151 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rln3Q8CHK2 141 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gpr153Q8K0Z9 631 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr129Q8VEY1 330 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Vps25Q9CQ80 176 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tmprss2Q9JIQ8 490 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Ascl3Q9JJR7 174 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Cst10Q9JM84 148 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mmp16Q9WTR0 607 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm6665F6Y363 85 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Sh2b3O09039 548 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Vmn1r195Q5SVD6 316 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Slc34a1Q60825 637 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 TprkbQ8QZZ7 175 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rcc1Q8VE37 421 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr638Q8VH20 321 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rnps1Q99M28 305 aaKnown RBP13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 GpnmbQ99P91 574 aa13.67□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Sumo1P63166 101 aaKnown RBP13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mob3cQ8BJG4 216 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr974Q8VH09 310 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 SostQ99P68 211 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Cst6Q9D1B1 149 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm28285A0A087WQ54 102 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm10439A2AJU2 433 aaKnown RBP13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm15114B1B0X6 433 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 9130019O22RikG3X941 543 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Casp16-psI6L890 176 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr43Q7TRX1 313 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr403Q7TRX2 313 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Lhfpl2Q8BGA2 222 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 SowahbQ8BZW2 760 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 C130073F10RikQ8C4L8 201 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 March11Q8CBH7 400 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr137Q8VFC2 312 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 SmagpQ99KC7 97 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tmem178aQ9CZ16 297 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Scgb1b15A0A087WP50 93 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Trav13d-3J3QMG8 112 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zfp58P16372 489 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Lsm6P62313 80 aaKnown RBP13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zfp30Q60585 533 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Utf1Q6J1H4 339 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Hes7Q8BKT2 225 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 B3gnt8Q8R3I9 389 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Sft2d2Q8VD57 159 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 PaplnQ9EPX2 1280 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Anxa10Q9QZ10 324 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Arg1Q61176 323 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 YbeyQ8CAV0 164 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rpp14Q9CQH8 122 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 4930447A16RikQ9D5F6 132 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Vmn1r41Q9EQ44 310 aa13.66□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm10358A0A1D5RLD8 333 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Stpg3A2RSX4 306 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 4930444P10RikD3YUR1 185 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 GapdhP16858 333 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 D330020A13RikQ8C799 211 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 UmodQ91X17 642 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Crybb1Q9WVJ5 250 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm3839S4R1W1 333 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Loxhd1C8YR32 2068 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 TprF6ZDS4 2431 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Cacna1aP97445 2368 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 PtgfrP43117 366 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr132Q7TRI8 313 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gpbar1Q80SS6 329 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Pld4Q8BG07 503 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Pla2g3Q8BZT7 504 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Oraov1Q8CH62 137 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Znf385aQ8VD12 386 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Arxes1C0HK79 180 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Arxes2C0HK80 180 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm42957D6RFQ2 366 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tnfrsf17O88472 185 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mtnd6P03925 172 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zfp954Q7TNU5 416 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Mansc1Q9CR33 414 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tm7sf3Q9CRG1 565 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Eif3gQ9Z1D1 320 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Zfp334A2A4U6 679 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Sertad4A7DTG3 377 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 P2rx6O54803 389 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Prss2P07146 246 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Scd2P13011 358 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Rpl29P47915 160 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Ascl1Q02067 231 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Vmn1r15Q14C10 299 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Parp16Q7TMM8 322 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr1131Q7TR45 309 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Olfr901Q7TRD1 311 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Ndufv3Q8BK30 104 aaKnown RBP13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Tox4Q8BU11 619 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Gm5111Q8C9M4 190 aa13.65□□□□□ -0.22
Ccdc88b-201ENSMUST00000113440 Alkbh6Q8K2U2 238 aa13.65□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 111.7 ms