RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF880Q6PDB4 577 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 IDO2Q6ZQW0 420 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 GTSCR1Q86UQ5 136 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 BVESQ8NE79 360 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 CYGBQ8WWM9 190 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 C5orf30Q96GV9 206 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 TMEM80Q96HE8 168 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 TMEM59Q9BXS4 323 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 SLA2Q9H6Q3 261 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 COA4Q9NYJ1 87 aa6.54□□□□□ -1.36
SHKBP1-220ENST00000599716 SRRM4A7MD48 611 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 H0Y980 276 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 ATP5HO75947 161 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 HLA-AP01891 365 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 MC5RP33032 325 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 HLA-DRB3P79483 266 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 QRFPP83859 136 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 PLA2G7Q13093 441 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 PMS2P11Q13670 270 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 P2RY14Q15391 338 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 MRGPRG-AS1Q2M3A8 158 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 RPEL1Q2QD12 228 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 CD300EQ496F6 205 aaPredicted RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 RBM48Q5RL73 367 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 LY6G6FQ5SQ64 297 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 FAM71F2Q6NXP2 309 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 LINC00322Q6ZN03 302 aaPredicted RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF554Q86TJ5 538 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 LRRTM1Q86UE6 522 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 PQLC1Q8N2U9 271 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF555Q8NEP9 628 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 TSNAXQ99598 290 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 NEURL2Q9BR09 285 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 S100A14Q9HCY8 104 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 SLC35D1Q9NTN3 355 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 CHCHD3Q9NX63 227 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 FAM53CQ9NYF3 392 aa6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 PEF1Q9UBV8 284 aaKnown RBP6.53□□□□□ -1.36
SHKBP1-220ENST00000599716 FAT2Q9NYQ8 4349 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 SHISA3A0PJX4 238 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 MSGN1A6NI15 193 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF785A8K8V0 405 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 PPP5D1E7EU14 171 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 BMPR1BO00238 502 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 RBBP9O75884 186 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 LY6G6CO95867 125 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 IGHV3-23P01764 117 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 CRYGBP07316 175 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 GNAO1P09471 354 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 CLDN12P56749 244 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 EWSR1Q01844 656 aaKnown RBP eCLIP6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 ACSM3Q53FZ2 586 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 C10orf55Q5SWW7 151 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 LCN12Q6JVE5 192 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF343Q6P1L6 599 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 ZFP1Q6P2D0 407 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 AHSA2Q719I0 299 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 NKAIN3Q8N8D7 197 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 CACNG8Q8WXS5 425 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 MAFIPQ8WZ33 124 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 WDR89Q96FK6 387 aaPredicted RBP6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 PHB2Q99623 299 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 GFI1Q99684 422 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 UQCC2Q9BRT2 126 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 TINAGL1Q9GZM7 467 aaPredicted RBP6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 LPAR5Q9H1C0 372 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 SRD5A3Q9H8P0 318 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 PLEKHJ1Q9NW61 149 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 SMPD3Q9NY59 655 aaPredicted RBP6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 RDH8Q9NYR8 311 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 S4R3C0 116 aa6.52□□□□□ -1.37
SHKBP1-220ENST00000599716 A0A0G2JLM5 398 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 TMEM14DPA8MWL7 114 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 J3QRK9 145 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 TPPPO94811 219 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 SPDEFO95238 335 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 APOA2P02652 100 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 ZBTB25P24278 435 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 MECP2P51608 486 aaKnown RBP6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 TMEM50BP56557 158 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 WNT4P56705 351 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF45Q02386 682 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 EXOSC2Q13868 293 aaKnown RBP6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 TNXAQ16473 311 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 GUCA2BQ16661 112 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 IGSF11Q5DX21 431 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 RNLSQ5VYX0 342 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 PDPNQ86YL7 162 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 CDH26Q8IXH8 852 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 Q8N402 240 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 ARHGAP5-AS1Q96IT6 56 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 HARBI1Q96MB7 349 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 TM2D1Q9BX74 207 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 OR2D2Q9H210 308 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 Q9N2K0 584 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 AKIP1Q9NQ31 210 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF221Q9UK13 617 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 LRRC42Q9Y546 428 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 DNAH2Q9P225 4427 aa6.51□□□□□ -1.37
SHKBP1-220ENST00000599716 IRGMA1A4Y4 181 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms