RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 STUB1Q9UNE7 303 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 LCE6AA0A183 80 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 SPDEFO95238 335 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 TRGV3P03979 118 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 HLA-DRB3P79483 266 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 SSX1Q16384 188 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 KCTD21Q4G0X4 260 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 HSD17B12Q53GQ0 312 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 ZNF773Q6PK81 442 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 DRAXINQ8NBI3 349 aaPredicted RBP16.15■□□□□ 0.18
VPS53-216ENST00000574029 FCGR1BQ92637 280 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 TSNAXQ99598 290 aaKnown RBP16.15■□□□□ 0.18
VPS53-216ENST00000574029 HDHD3Q9BSH5 251 aaPredicted RBP16.15■□□□□ 0.18
VPS53-216ENST00000574029 LPAR5Q9H1C0 372 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 RANGRFQ9HD47 186 aaPredicted RBP16.15■□□□□ 0.18
VPS53-216ENST00000574029 AK3Q9UIJ7 227 aa16.15■□□□□ 0.18
VPS53-216ENST00000574029 RYR2Q92736 4967 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 BPNT1O95861 308 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 IGKV1-16P04430 117 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 FABP5Q01469 135 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 ZNF383Q8NA42 475 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 EDA2RQ9HAV5 297 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 NDUFB11Q9NX14 153 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 GAR1Q9NY12 217 aaKnown RBP16.14■□□□□ 0.17
VPS53-216ENST00000574029 MGAT4AQ9UM21 535 aa16.14■□□□□ 0.17
VPS53-216ENST00000574029 H3BUA1 57 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 SOCS1O15524 211 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 ARL6IP5O75915 188 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 ZP3P21754 424 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 LINC00205P59089 165 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 RPS16P62249 146 aaKnown RBP16.13■□□□□ 0.17
VPS53-216ENST00000574029 FXYD3Q14802 87 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 ANKRD13BQ86YJ7 626 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 PDPNQ86YL7 162 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 SGPP2Q8IWX5 399 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 FAM89BQ8N5H3 189 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 OR6M1Q8NGM8 313 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 RSRP1Q9BUV0 290 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 Q9N2K0 584 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 HSF4Q9ULV5 492 aa16.13■□□□□ 0.17
VPS53-216ENST00000574029 FOXI3A8MTJ6 420 aaPredicted RBP16.12■□□□□ 0.17
VPS53-216ENST00000574029 SCTP09683 121 aa16.12■□□□□ 0.17
VPS53-216ENST00000574029 GALP22466 123 aa16.12■□□□□ 0.17
VPS53-216ENST00000574029 POC5Q8NA72 575 aa16.12■□□□□ 0.17
VPS53-216ENST00000574029 ZNF221Q9UK13 617 aa16.12■□□□□ 0.17
VPS53-216ENST00000574029 C13orf42A0A1B0GVH6 325 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 SSBP2P81877 361 aaPredicted RBP16.11■□□□□ 0.17
VPS53-216ENST00000574029 MOGAT2Q3SYC2 334 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 ZFAND6Q6FIF0 208 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 GRPEL2Q8TAA5 225 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 URM1Q9BTM9 101 aaKnown RBP16.11■□□□□ 0.17
VPS53-216ENST00000574029 ZNF355PQ9NSJ1 428 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 SACSQ9NZJ4 4579 aa16.11■□□□□ 0.17
VPS53-216ENST00000574029 IGKV1-6A0A0C4DH72 117 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 A0A0G2JLM5 398 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 TRDV1A0A1B0GX56 115 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 SLC25A17O43808 307 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 APOA2P02652 100 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 KLF5Q13887 457 aaPredicted RBP16.1■□□□□ 0.17
VPS53-216ENST00000574029 OR5T1Q8NG75 326 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 ISOC1Q96CN7 298 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 C12orf4Q9NQ89 552 aa16.1■□□□□ 0.17
VPS53-216ENST00000574029 BRI3O95415 125 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 IGLV2-23P01705 113 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 CRYGBP07316 175 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 ARSBP15848 533 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 VEGFCP49767 419 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 TMEM50BP56557 158 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 IL34Q6ZMJ4 242 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 OR9G4Q8NGQ1 327 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 TMEM68Q96MH6 324 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 GFI1Q99684 422 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 RDH8Q9NYR8 311 aa16.09■□□□□ 0.17
VPS53-216ENST00000574029 TRAV1-2A0A0B4J238 106 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 ANKRD34BA5PLL1 514 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 SLC17A2O00624 439 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 CALRP27797 417 aaKnown RBP16.08■□□□□ 0.16
VPS53-216ENST00000574029 PSMB9P28065 219 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 PSMD7P51665 324 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 P2RY14Q15391 338 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.08■□□□□ 0.16
VPS53-216ENST00000574029 PECRQ9BY49 303 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 SLC35D1Q9NTN3 355 aa16.08■□□□□ 0.16
VPS53-216ENST00000574029 TRDCB7Z8K6 153 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 H0Y980 276 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 M0R1X1 148 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 CNIH1O95406 144 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 LGALS7P47929 136 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 PJVKQ0ZLH3 352 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 ARHGAP5-AS1Q96IT6 56 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 CMSS1Q9BQ75 279 aaKnown RBP16.07■□□□□ 0.16
VPS53-216ENST00000574029 SPATA25Q9BR10 227 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 PLGRKTQ9HBL7 147 aa16.07■□□□□ 0.16
VPS53-216ENST00000574029 TNFAIP8O95379 198 aa16.06■□□□□ 0.16
VPS53-216ENST00000574029 AADACP22760 399 aa16.06■□□□□ 0.16
VPS53-216ENST00000574029 FGF9P31371 208 aaPredicted RBP16.06■□□□□ 0.16
VPS53-216ENST00000574029 PLAC9Q5JTB6 97 aa16.06■□□□□ 0.16
VPS53-216ENST00000574029 ZNF343Q6P1L6 599 aa16.06■□□□□ 0.16
VPS53-216ENST00000574029 THAP7Q9BT49 309 aaPredicted RBP16.06■□□□□ 0.16
VPS53-216ENST00000574029 TINAGL1Q9GZM7 467 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms