RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RAMP3O60896 148 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ATP6V1G2O95670 118 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 CA2P00918 260 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 OR8U8P0C7N1 319 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 OR8U9P0C7N5 309 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 HIST1H1DP16402 221 aaKnown RBP8.38□□□□□ -1.07
VPS39-208ENST00000564994 RAB6AP20340 208 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 GALP22466 123 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 MYL9P24844 172 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ECI1P42126 302 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 RANBP1P43487 201 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 SERPINB10P48595 397 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 SSBP2P81877 361 aaPredicted RBP8.38□□□□□ -1.07
VPS39-208ENST00000564994 CD69Q07108 199 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ZNF616Q08AN1 781 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ZNF260Q3ZCT1 412 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 VAX1Q5SQQ9 334 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 UBE2UQ5VVX9 321 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ZNF562Q6V9R5 426 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 PPP1R27Q86WC6 154 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 PDPNQ86YL7 162 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 SPARTQ8N0X7 666 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 ABHD5Q8WTS1 349 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 SDHAF2Q9NX18 166 aa8.38□□□□□ -1.07
VPS39-208ENST00000564994 LSM4Q9Y4Z0 139 aaKnown RBP8.38□□□□□ -1.07
VPS39-208ENST00000564994 IGKV1D-8A0A087WSZ0 117 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 ARPC1BO15143 372 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 SLC25A17O43808 307 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 MRPS14O60783 128 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 SPDEFO95238 335 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 IGLV2-23P01705 113 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 GADD45AP24522 165 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 SLURP1P55000 103 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 RPS16P62249 146 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 MRPS15P82914 257 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 AKIRIN2Q53H80 203 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 ACTBL2Q562R1 376 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 UNQ5815/PRO19632Q6UWF5 114 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 TCTEX1D1Q8N7M0 179 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 LFNGQ8NES3 379 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 OR10J5Q8NHC4 309 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 DCUN1D4Q92564 292 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 TSNAXQ99598 290 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 OR2D2Q9H210 308 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 SLC35D1Q9NTN3 355 aa8.37□□□□□ -1.07
VPS39-208ENST00000564994 TXNL4BQ9NX01 149 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 ZMAT5Q9UDW3 170 aaKnown RBP8.37□□□□□ -1.07
VPS39-208ENST00000564994 IGHV4OR15-8A0A075B7B6 117 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 A0A087WW49 117 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 DIRAS3O95661 229 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 IGHV3-11P01762 117 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 APOA2P02652 100 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 CRYGBP07316 175 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 LGALS1P09382 135 aaKnown RBP8.36□□□□□ -1.07
VPS39-208ENST00000564994 PSMB9P28065 219 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 FGF9P31371 208 aaPredicted RBP8.36□□□□□ -1.07
VPS39-208ENST00000564994 TMEM267Q0VDI3 215 aaPredicted RBP8.36□□□□□ -1.07
VPS39-208ENST00000564994 PJVKQ0ZLH3 352 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 Q6ZS49 121 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 ARPC1AQ92747 370 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 DLX4Q92988 240 aaPredicted RBP8.36□□□□□ -1.07
VPS39-208ENST00000564994 FLYWCH2Q96CP2 140 aaKnown RBP8.36□□□□□ -1.07
VPS39-208ENST00000564994 MS4A10Q96PG2 267 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 ATG5Q9H1Y0 275 aa8.36□□□□□ -1.07
VPS39-208ENST00000564994 METTL21EPA6NDL7 271 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 SRRM4A7MD48 611 aaKnown RBP8.35□□□□□ -1.07
VPS39-208ENST00000564994 NOTOA8MTQ0 251 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 LINC01619G3V211 115 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 OVOL1O14753 267 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 TPPP2P59282 170 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 ARFRP1Q13795 201 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 FXYD3Q14802 87 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 SRSF7Q16629 238 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-208ENST00000564994 MRGPRG-AS1Q2M3A8 158 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 PYHIN1Q6K0P9 492 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 H1FOOQ8IZA3 346 aaPredicted RBP8.35□□□□□ -1.07
VPS39-208ENST00000564994 BVESQ8NE79 360 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 GRPEL2Q8TAA5 225 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 DDB2Q92466 427 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 RHOVQ96L33 236 aa8.35□□□□□ -1.07
VPS39-208ENST00000564994 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-208ENST00000564994 ZNF256Q9Y2P7 627 aaPredicted RBP8.35□□□□□ -1.07
VPS39-208ENST00000564994 LINC00473A8K010 186 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 DUTP33316 252 aaKnown RBP8.34□□□□□ -1.07
VPS39-208ENST00000564994 TALDO1P37837 337 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 LGALS7P47929 136 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 INSL3P51460 131 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 DCTN2Q13561 401 aaKnown RBP8.34□□□□□ -1.07
VPS39-208ENST00000564994 CDNFQ49AH0 187 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 TMEM177Q53S58 311 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 OR5T1Q8NG75 326 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 HARBI1Q96MB7 349 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 GINS4Q9BRT9 223 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 OR51E2Q9H255 320 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 RNF167Q9H6Y7 350 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 DAPK2Q9UIK4 370 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 STUB1Q9UNE7 303 aa8.34□□□□□ -1.07
VPS39-208ENST00000564994 J3QRK9 145 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 TRGV3P03979 118 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms