RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 IGSF23A1L1A6 192 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 M0R036 132 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 KCNK1O00180 336 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 DCTN3O75935 186 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 RPS17P08708 135 aaKnown RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 ZNF22P17026 224 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 CCL1P22362 96 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 CCR7P32248 378 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 HAAOP46952 286 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 SNAP25P60880 206 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 NAA20P61599 178 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 LSM6P62312 80 aaKnown RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 ZNF141Q15928 474 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 MRPL51Q4U2R6 128 aaKnown RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 SAPCD1Q5SSQ6 148 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 C1orf194Q5T5A4 169 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 N4BP2L1Q5TBK1 243 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 MFSD8Q8NHS3 518 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 OR5P3Q8WZ94 311 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 PPP1R14BQ96C90 147 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 SLC25A44Q96H78 314 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-221ENST00000556534 ANKRD36BP1Q96IX9 119 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 STACQ99469 402 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 TBX5Q99593 518 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 C16orf95Q9H693 158 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 HES4Q9HCC6 221 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 ASF1BQ9NVP2 202 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 EMC3Q9P0I2 261 aa1.84□□□□□ -2.11
SCFD1-221ENST00000556534 LAMC3Q9Y6N6 1575 aa1.84□□□□□ -2.12
SCFD1-221ENST00000556534 PCNX2A6NKB5 2137 aa1.84□□□□□ -2.12
SCFD1-221ENST00000556534 KIF21AQ7Z4S6 1674 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 ZFYVE9O95405 1425 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 TGIF2-C20orf24A0A0A6YYL0 155 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 SMIM23A6NLE4 172 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 ZNF878C9JN71 531 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 D6RAR5 112 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 CRYGDP07320 174 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 IGHV3-30-3P0DP02 117 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 MYL12AP19105 171 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 CRABP1P29762 137 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 DDTP30046 118 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 CA7P43166 264 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 MRPS15P82914 257 aaKnown RBP1.83□□□□□ -2.12
SCFD1-221ENST00000556534 TNFRSF9Q07011 255 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 OR2F1Q13607 317 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 TMEM176BQ3YBM2 270 aaPredicted RBP1.83□□□□□ -2.12
SCFD1-221ENST00000556534 SDIM1Q6ZPB5 146 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 ZNF550Q7Z398 422 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 TMEM86BQ8N661 226 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 UBL4BQ8N7F7 174 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 MUC7Q8TAX7 377 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 LMX1AQ8TE12 382 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 C16orf78Q8WTQ4 265 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 RNASE6Q93091 150 aaKnown RBP1.83□□□□□ -2.12
SCFD1-221ENST00000556534 IGF2BP2-AS1Q96M15 143 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 CCDC42Q96M95 316 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 TMEM109Q9BVC6 243 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 C11orf1Q9H5F2 150 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 FIS1Q9Y3D6 152 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 ZBED9Q6R2W3 1325 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 UTRNP46939 3433 aa1.83□□□□□ -2.12
SCFD1-221ENST00000556534 PLXNB1O43157 2135 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 GAPVD1Q14C86 1478 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 CEP164Q9UPV0 1460 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 ITGB4P16144 1822 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 NYNRINQ9P2P1 1898 aaKnown RBP1.82□□□□□ -2.12
SCFD1-221ENST00000556534 A0A1W2PQL4 384 aaPredicted RBP1.82□□□□□ -2.12
SCFD1-221ENST00000556534 C19orf71A6NCJ1 209 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 A8MWP6 167 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 GSTZ1O43708 216 aaPredicted RBP1.82□□□□□ -2.12
SCFD1-221ENST00000556534 MT-CO2P00403 227 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 TCRBP04435 133 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 IFNA16P05015 189 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 CD7P09564 240 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 CTXN2P0C2S0 81 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 MAP2K4P45985 399 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 TMEM33P57088 247 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 TSPEAR-AS2P59090 65 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 RAB5BP61020 215 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 RANP62826 216 aaKnown RBP1.82□□□□□ -2.12
SCFD1-221ENST00000556534 EMX1Q04741 257 aaPredicted RBP1.82□□□□□ -2.12
SCFD1-221ENST00000556534 FAM229BQ4G0N7 80 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 SBSNQ6UWP8 590 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 ALKAL1Q6UXT8 129 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 SLC51BQ86UW2 128 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 BAP18Q8IXM2 172 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 OR51D1Q8NGF3 324 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 JOSD2Q8TAC2 188 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 RAD51AP1Q96B01 352 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 ABCG5Q9H222 651 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 LRRC19Q9H756 370 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 LTBP2Q14767 1821 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 PTPRMP28827 1452 aa1.82□□□□□ -2.12
SCFD1-221ENST00000556534 TMEM210A6NLX4 147 aa1.81□□□□□ -2.12
SCFD1-221ENST00000556534 C17orf98A8MV24 154 aa1.81□□□□□ -2.12
SCFD1-221ENST00000556534 ESDP10768 282 aa1.81□□□□□ -2.12
SCFD1-221ENST00000556534 CRYBB3P26998 211 aa1.81□□□□□ -2.12
SCFD1-221ENST00000556534 CDK9P50750 372 aaKnown RBP1.81□□□□□ -2.12
SCFD1-221ENST00000556534 CEBPGP53567 150 aa1.81□□□□□ -2.12
SCFD1-221ENST00000556534 AESQ08117 197 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms