RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 IGKV1-33P01594 117 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 RLN1P04808 185 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 BRS3P32247 399 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 IER3P46695 156 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 THBS3P49746 956 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 EIF4EBP1Q13541 118 aaPredicted RBP11.01□□□□□ -0.65
CD44-224ENST00000526669 ABCA11PQ4W5N1 156 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 KCTD9Q7L273 389 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 LURAP1LQ8IV03 231 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 BVESQ8NE79 360 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 PIFOQ8TCI5 191 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 DEDD2Q8WXF8 326 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 PRDM13Q9H4Q3 707 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 SLC35D1Q9NTN3 355 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 C14orf166Q9Y224 244 aaKnown RBP11.01□□□□□ -0.65
CD44-224ENST00000526669 C2CD3Q4AC94 2353 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 BTBD17A6NE02 478 aa11□□□□□ -0.65
CD44-224ENST00000526669 VGLL3A8MV65 326 aa11□□□□□ -0.65
CD44-224ENST00000526669 FCGR3BO75015 233 aa11□□□□□ -0.65
CD44-224ENST00000526669 PEX14O75381 377 aa11□□□□□ -0.65
CD44-224ENST00000526669 APOA2P02652 100 aa11□□□□□ -0.65
CD44-224ENST00000526669 CTSDP07339 412 aaPredicted RBP11□□□□□ -0.65
CD44-224ENST00000526669 PIGPP57054 158 aa11□□□□□ -0.65
CD44-224ENST00000526669 ASAH1Q13510 395 aa11□□□□□ -0.65
CD44-224ENST00000526669 LPCAT3Q6P1A2 487 aa11□□□□□ -0.65
CD44-224ENST00000526669 TBC1D26Q86UD7 250 aa11□□□□□ -0.65
CD44-224ENST00000526669 ZDHHC22Q8N966 263 aa11□□□□□ -0.65
CD44-224ENST00000526669 POC5Q8NA72 575 aa11□□□□□ -0.65
CD44-224ENST00000526669 ZBTB34Q8NCN2 500 aa11□□□□□ -0.65
CD44-224ENST00000526669 ADAD2Q8NCV1 583 aaKnown RBP11□□□□□ -0.65
CD44-224ENST00000526669 ZFAND1Q8TCF1 268 aa11□□□□□ -0.65
CD44-224ENST00000526669 SSMEM1Q8WWF3 244 aa11□□□□□ -0.65
CD44-224ENST00000526669 AKR1E2Q96JD6 320 aa11□□□□□ -0.65
CD44-224ENST00000526669 SLC2A9Q9NRM0 540 aa11□□□□□ -0.65
CD44-224ENST00000526669 GPR132Q9UNW8 380 aa11□□□□□ -0.65
CD44-224ENST00000526669 FLVCR2Q9UPI3 526 aa11□□□□□ -0.65
CD44-224ENST00000526669 FAM90A9PA6NNJ1 464 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 PGLYRP1O75594 196 aaPredicted RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 TMEM11P17152 192 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 CNTFRP26992 372 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 CD1BP29016 333 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 ECI1P42126 302 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 DYNLT3P51808 116 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 CATR1Q13166 79 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 HABP2Q14520 560 aaPredicted RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 RBMS2Q15434 407 aaKnown RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 SLC9A3R2Q15599 337 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 MSMO1Q15800 293 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 MZT2BQ6NZ67 158 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 CCBE1Q6UXH8 406 aaPredicted RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 ZNF66Q6ZN08 573 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 TMED4Q7Z7H5 227 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 CMTM1Q8IZ96 169 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 DDB2Q92466 427 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 ADTRPQ96IZ2 230 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 EAF1Q96JC9 268 aaPredicted RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 RITA1Q96K30 269 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 HSD17B10Q99714 261 aaKnown RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 RTBDNQ9BSG5 229 aaPredicted RBP10.99□□□□□ -0.65
CD44-224ENST00000526669 CHIAQ9BZP6 476 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 DPAGT1Q9H3H5 408 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 C5orf66Q9H5L9 145 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 COPZ2Q9P299 210 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 TCF19Q9Y242 345 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 WASHC3Q9Y3C0 194 aa10.99□□□□□ -0.65
CD44-224ENST00000526669 FAM240BA0A1B0GVZ2 78 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 A6NDX4 124 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 ARPC1BO15143 372 aaKnown RBP10.98□□□□□ -0.65
CD44-224ENST00000526669 CRYZL1O95825 349 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 AKR1C4P17516 323 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 DEFA1P59665 94 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 DEFA3P59666 94 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 HILS1P60008 231 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 SURF2Q15527 256 aaPredicted RBP10.98□□□□□ -0.65
CD44-224ENST00000526669 AANATQ16613 207 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 CCDC71LQ8N9Z2 235 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 OR5AN1Q8NGI8 311 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 OR2T10Q8NGZ9 312 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 OR5R1Q8NH85 324 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 ENKURQ8TC29 256 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 TMEM230Q96A57 120 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 ZNF486Q96H40 463 aaPredicted RBP10.98□□□□□ -0.65
CD44-224ENST00000526669 SLC25A33Q9BSK2 321 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 BEX1Q9HBH7 125 aa10.98□□□□□ -0.65
CD44-224ENST00000526669 TRAV6A0A075B6T7 132 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 TCF21O43680 179 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 CHST1O43916 411 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 NDUFB6O95139 128 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 MOSP00540 346 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 IGKV1-16P04430 117 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 S100GP29377 79 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 BRWD1-AS2P59051 145 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 RND3P61587 244 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 RPS16P62249 146 aaKnown RBP10.97□□□□□ -0.65
CD44-224ENST00000526669 RTL8BQ17RB0 113 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 SPAG16Q8N0X2 631 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 TAF15Q92804 592 aaKnown RBP eCLIP10.97□□□□□ -0.65
CD44-224ENST00000526669 SCGB3A2Q96PL1 93 aa10.97□□□□□ -0.65
CD44-224ENST00000526669 SLC25A21Q9BQT8 299 aaPredicted RBP10.97□□□□□ -0.65
CD44-224ENST00000526669 VPREB3Q9UKI3 123 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms