RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 HSF4Q9ULV5 492 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 AK6Q9Y3D8 172 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 V9GY05 133 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ITGB1BP1O14713 200 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 PDCD5O14737 125 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 NBR2O15453 112 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 IGF1P05019 195 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 S100A6P06703 90 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 ELANEP08246 267 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 SLC2A2P11168 524 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 ZBTB25P24278 435 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 MYL9P24844 172 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 OR3A3P47888 321 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 VEGFCP49767 419 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 CLDN12P56749 244 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 ACTBP60709 375 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 CTAG1AP78358 180 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 HLA-DRB3P79483 266 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 C18orf65Q6ZTR6 163 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 RNF152Q8N8N0 203 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 OR56B1Q8NGI3 324 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 OR8U1Q8NH10 309 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 ST8SIA2Q92186 375 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 FAM3DQ96BQ1 224 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 NABP2Q9BQ15 211 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 CMSS1Q9BQ75 279 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 CHCHD6Q9BRQ6 235 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 HDHD3Q9BSH5 251 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 CENPOQ9BU64 300 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 GHITMQ9H3K2 345 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 Q9N2K0 584 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 KIAA1456Q9P272 454 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 EXTL2Q9UBQ6 330 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 DKK2Q9UBU2 259 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 SLC23A1Q9UHI7 598 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB22AQ9UL26 194 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB26Q9ULW5 256 aa5.32□□□□□ -1.56
CCDC88A-213ENST00000476903 TRAV1-2A0A0B4J238 106 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 TMEM272A0A1B0GTI8 110 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 OR5H14A6NHG9 310 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 FOXI3A8MTJ6 420 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CCL24O00175 119 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 HSPA12AO43301 675 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 DENRO43583 198 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 MRPS14O60783 128 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 NDUFA3O95167 84 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 IGHG4P01861 327 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 HLA-DRB1P01911 266 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 GALP22466 123 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CNTFRP26992 372 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 MC5RP33032 325 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CEACAM6P40199 344 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CDX1P47902 265 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB25P57735 213 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 GABARAPL2P60520 117 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 MRPS15P82914 257 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CFHR3Q02985 330 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 EGFEM1PQ0D2K5 195 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 SSX1Q16384 188 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 C5orf64Q2M2E5 130 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 C2orf76Q3KRA6 126 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 RPL39P5Q59GN2 51 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 HES5Q5TA89 166 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 LIN54Q6MZP7 749 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 TMEM65Q6PI78 240 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 CD200R1LQ6Q8B3 271 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 FAM131AQ6UXB0 335 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 NPBQ8NG41 125 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 OR5AN1Q8NGI8 311 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 C4orf3Q8WVX3 66 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 RBMXL1Q96E39 390 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 RAX2Q96IS3 184 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 ARHGAP5-AS1Q96IT6 56 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 KCTD7Q96MP8 289 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 P2RX4Q99571 388 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 PECRQ9BY49 303 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 OR51J1Q9H342 316 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 Q9H521 79 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 NDUFB11Q9NX14 153 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 OR1A1Q9P1Q5 309 aa5.31□□□□□ -1.56
CCDC88A-213ENST00000476903 DNAH3Q8TD57 4116 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 IGHV7-81A0A0B4J1V7 117 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 TRDV1A0A1B0GX56 115 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 IFITM5A6NNB3 132 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 TRDCB7Z8K6 153 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 H0YJW9 148 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 H7C2Y5 167 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 LDLRAD4O15165 306 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 ATP6V0E1O15342 81 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 RBBP9O75884 186 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 ATP6V1G2O95670 118 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 SCTP09683 121 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 CD3GP09693 182 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 CT45A6P0DMU7 189 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 CT45A5P0DMU8 189 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 CT45A7P0DMV0 189 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB3BP20337 219 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 GADD45AP24522 165 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PSMB8P28062 276 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 HOXD3P31249 432 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms