RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 FSTP19883 344 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 PGLYRP3Q96LB9 341 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 SEPSECSQ9HD40 501 aaKnown RBP11.52□□□□□ -0.57
USP40-208ENST00000450966 MED29Q9NX70 200 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 TMEM30CPA0ZSE6 113 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 KIR2DL1P43626 348 aaPredicted RBP11.52□□□□□ -0.57
USP40-208ENST00000450966 CNRIP1Q96F85 164 aaPredicted RBP11.52□□□□□ -0.57
USP40-208ENST00000450966 PRRC2BQ5JSZ5 2229 aaKnown RBP11.52□□□□□ -0.57
USP40-208ENST00000450966 A0A1B0GTI1 187 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 A0A1B0GW64 132 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 FAM219BQ5XKK7 198 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.52□□□□□ -0.57
USP40-208ENST00000450966 CT55Q8WUE5 264 aa11.52□□□□□ -0.57
USP40-208ENST00000450966 OR11H12B2RN74 326 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 CEACAM6P40199 344 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 LRRC10Q5BKY1 277 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 TEPPQ6URK8 271 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 NR2C2APQ86WQ0 139 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 OR11H1Q8NG94 326 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 OR11H2Q8NH07 326 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 SPSB4Q96A44 273 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 TMEM230Q96A57 120 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 CSTL1Q9H114 145 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 XIRP1Q702N8 1843 aaKnown RBP11.51□□□□□ -0.57
USP40-208ENST00000450966 NDUFB3O43676 98 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 FCGR3AP08637 254 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 TSPOP30536 169 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 ADMP35318 185 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 FER1L6-AS1Q8NA97 138 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 OR9G4Q8NGQ1 327 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 ZNF479Q96JC4 524 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 ZFC3H1O60293 1989 aaKnown RBP11.51□□□□□ -0.57
USP40-208ENST00000450966 TRGV10A0A0A0MS01 117 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 IGHV3-15A0A0B4J1V0 119 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 SRD5A2P31213 254 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 FOXF1Q12946 379 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 Q8IYB0 196 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 ZNF519Q8TB69 540 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 AQP3Q92482 292 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 A0A0A6YYD5 115 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 TRBV5-5A0A0J9YX44 114 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 A0A1W2PR80 420 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 MSGN1A6NI15 193 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 EML2O95834 649 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 B4GALT1P15291 398 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 KIR2DL2P43627 348 aaPredicted RBP11.51□□□□□ -0.57
USP40-208ENST00000450966 BHLHA15Q7RTS1 189 aaPredicted RBP11.51□□□□□ -0.57
USP40-208ENST00000450966 C10orf35Q96D05 121 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 SPANXDQ9BXN6 97 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 LOC105371242A0A075B767 164 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 PPIAL4CA0A0B4J2A2 164 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 IGHV3-64DA0A0J9YX35 117 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 ZNF205O95201 554 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 TMEM50AO95807 157 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 PPIAL4GP0DN37 164 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 DRD3P35462 400 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 OR1B1Q8NGR6 318 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 OR1F12Q8NHA8 337 aa11.51□□□□□ -0.57
USP40-208ENST00000450966 MARS2Q96GW9 593 aaKnown RBP11.51□□□□□ -0.57
USP40-208ENST00000450966 SP9P0CG40 484 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 SLC25A28Q96A46 364 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 COL11A2P13942 1736 aaPredicted RBP11.5□□□□□ -0.57
USP40-208ENST00000450966 SHANK3Q9BYB0 1731 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 TMEM144Q7Z5S9 345 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 NUP37Q8NFH4 326 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 TMEM222Q9H0R3 208 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 SNAI2O43623 268 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 CD40P25942 277 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 PQLC2Q6ZP29 291 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 NOXO1Q8NFA2 376 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 RND1Q92730 232 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 ZNF764Q96H86 408 aaPredicted RBP11.5□□□□□ -0.57
USP40-208ENST00000450966 GPR27Q9NS67 375 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 UNQ9370/PRO34162Q6UXP9 181 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 SSMEM1Q8WWF3 244 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 MAP1LC3AQ9H492 121 aa11.5□□□□□ -0.57
USP40-208ENST00000450966 IGHV2-5P01817 119 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 RPS4XP62701 263 aaKnown RBP11.49□□□□□ -0.57
USP40-208ENST00000450966 RPL23P62829 140 aaKnown RBP11.49□□□□□ -0.57
USP40-208ENST00000450966 HBBP68871 147 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 ICAM4Q14773 271 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 C11orf68Q9H3H3 251 aaKnown RBP11.49□□□□□ -0.57
USP40-208ENST00000450966 C5orf66Q9H5L9 145 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 LRRC37AA6NMS7 1700 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 ZBTB34Q8NCN2 500 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 NHP2Q9NX24 153 aaKnown RBP11.49□□□□□ -0.57
USP40-208ENST00000450966 FOXL2P58012 376 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 PRDX4Q13162 271 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 ZNF841Q6ZN19 808 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 FOXB1Q99853 325 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 KLF4O43474 513 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 SOX8P57073 446 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 C10orf111Q8N326 155 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 RAB1BQ9H0U4 201 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 ZNF883P0CG24 379 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 OPRK1P41145 380 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 RPL30P62888 115 aaKnown RBP11.49□□□□□ -0.57
USP40-208ENST00000450966 FAM19A2Q8N3H0 131 aa11.49□□□□□ -0.57
USP40-208ENST00000450966 TRAV5A0A0B4J249 113 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 IGFBP6P24592 240 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms