RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 FGF12P61328 243 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 PCBD1P61457 104 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 DCAF12Q5T6F0 453 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 BAGE3Q86Y29 109 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 BAGE2Q86Y30 109 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 GTF3AQ92664 365 aaKnown RBP7.31□□□□□ -1.24
USP40-203ENST00000427112 SGK494Q96LW2 274 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 DDA1Q9BW61 102 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 SH3BGRL2Q9UJC5 107 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 PRSS47A8MTI9 375 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 NAPSAO96009 420 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 APOA2P02652 100 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 CTSSP25774 331 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 ID3Q02535 119 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 KIAA1644Q3SXP7 199 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 HIST3H2BBQ8N257 126 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 TMEM251Q8N6I4 163 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 NUDT16L1Q9BRJ7 211 aaKnown RBP7.3□□□□□ -1.24
USP40-203ENST00000427112 LOC102723971A0A1B0GUV8 181 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 CLDN34H7C241 214 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 LAMTOR5O43504 91 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 RPLP1P05386 114 aaKnown RBP7.3□□□□□ -1.24
USP40-203ENST00000427112 OR4A8P0C604 315 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 C1QTNF9P0C862 333 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 GATA2P23769 480 aaPredicted RBP7.3□□□□□ -1.24
USP40-203ENST00000427112 GALR1P47211 349 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 SLC10A1Q14973 349 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 WDR86Q86TI4 376 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 C1QL4Q86Z23 238 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 SCCPDHQ8NBX0 429 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 OR10G4Q8NGN3 311 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 OR10G9Q8NGN4 311 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 OR10G7Q8NGN6 311 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 GNPNAT1Q96EK6 184 aaPredicted RBP7.3□□□□□ -1.24
USP40-203ENST00000427112 C14orf144Q96I85 54 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 HIST1H2BLQ99880 126 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 SLC17A3O00476 420 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 SMPD2O60906 423 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 FCGR3BO75015 233 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 MPV17P39210 176 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 ECI1P42126 302 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 CEACAM21Q3KPI0 293 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 TMEM256Q8N2U0 113 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 NHLRC2Q8NBF2 726 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 OR2M7Q8NG81 312 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 SLC25A40Q8TBP6 338 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 TTTY12Q9BZ98 90 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 CHRNA10Q9GZZ6 450 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 OR51I2Q9H344 312 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 PPIAL4AQ9Y536 164 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 HCFC1P51610 2035 aa7.3□□□□□ -1.24
USP40-203ENST00000427112 KIR2DS1A0A191URI9 304 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 SEC14L6B5MCN3 397 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 PPP5D1E7EU14 171 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 NDUFB4O95168 129 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 SLC25A6P12236 298 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 HOXB1P14653 301 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 KIR2DS4P43632 304 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 HIST1H3AP68431 136 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 KIR2DS1Q14954 304 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 OR8B8Q15620 311 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 ABHD12Q8N2K0 398 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 ZNF525Q8N782 197 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 LFNGQ8NES3 379 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 PINX1Q96BK5 328 aaKnown RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 REPIN1Q9BWE0 567 aaKnown RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 ARV1Q9H2C2 271 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 PARLQ9H300 379 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 COLQQ9Y215 455 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 RNF115Q9Y4L5 304 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 IGLV3-32A0A0A0MS00 114 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 UCP1P25874 307 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 CCL11P51671 97 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 ZNF585BQ52M93 769 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 RNFT1Q5M7Z0 435 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 C6orf15Q6UXA7 325 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 ZNF114Q8NC26 417 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 LYPD6BQ8NI32 183 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 OIT3Q8WWZ8 545 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 C22orf15Q8WYQ4 148 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 NINJ1Q92982 152 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 RAB24Q969Q5 203 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 GPR87Q9BY21 358 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 EGLN1Q9GZT9 426 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 PRDM13Q9H4Q3 707 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 DNAJC4Q9NNZ3 241 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 GCM1Q9NP62 436 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 PILRBQ9UKJ0 227 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 CUL9Q8IWT3 2517 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 IGF2RP11717 2491 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 TRAV3A0A0B4J244 114 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 FOLR2P14207 255 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 BSXQ3C1V8 233 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 ARSJQ5FYB0 599 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 ZNF324BQ6AW86 544 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 APOBEC3DQ96AK3 386 aaPredicted RBP7.29□□□□□ -1.24
USP40-203ENST00000427112 TAAR9Q96RI9 348 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 GNG12Q9UBI6 72 aa7.29□□□□□ -1.24
USP40-203ENST00000427112 NUPR1O60356 82 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 MGST1P10620 155 aaKnown RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms