RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CKS2P33552 79 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 TNFSF10P50591 281 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 MFAP4P55083 255 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 ABLIM2Q6H8Q1 611 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 FGFRL1Q8N441 504 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 LOC390937A0A1W2PQ73 354 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 HSPB1P04792 205 aaKnown RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 SMIM10L1P0DMW3 83 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 REG1BP48304 166 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 RELQ04864 619 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 AQP3Q92482 292 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 SMIM10Q96HG1 83 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 TMEM56-RWDD3S4R434 201 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 TRBV5-5A0A0J9YX44 114 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 EFNB2P52799 333 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 TCL1AP56279 114 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 FAM53AQ6NSI3 398 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 SCARF2Q96GP6 870 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 ELOVL5Q9NYP7 299 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 PRR13Q9NZ81 148 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 PHLDA3Q9Y5J5 127 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 VWA8A3KMH1 1905 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 SCTP09683 121 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 IER3P46695 156 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 RPS20P60866 119 aaKnown RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 MEF2BQ02080 365 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 GALNT14Q96FL9 552 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 NRTNQ99748 197 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 DNAJC4Q9NNZ3 241 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 OR1N2Q8NGR9 330 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 VN1R17PQ8TDU5 208 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 COLQQ9Y215 455 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-204ENST00000395898 KLHDC2Q9Y2U9 406 aa4.71□□□□□ -1.66
VPS13C-204ENST00000395898 TRAV34A0A0B4J273 112 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 MARCH11A6NNE9 402 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 LINC00869P0C866 280 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 MFAP2P55001 183 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 AQP10Q96PS8 301 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TRAF4Q9BUZ4 470 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 IL11P20809 199 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 PMCHL1Q16048 86 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 FBLIM1Q8WUP2 373 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 LPAR2Q9HBW0 351 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 ODAMA1E959 279 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 LIPFP07098 398 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 COX6CP09669 75 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 SUCLG1P53597 346 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CIRBPQ14011 172 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 SNAI3Q3KNW1 292 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 RHOVQ96L33 236 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CCL13Q99616 98 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 JPT1Q9UK76 154 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 HLA-DQA1P01909 254 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 OR8A1Q8NGG7 326 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 KLF14Q8TD94 323 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TMEM186Q96B77 213 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 MS4A3Q96HJ5 214 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 IDI2-AS1Q9NZ38 188 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 GPR132Q9UNW8 380 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CENPVL1A0A0U1RR11 272 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 DLL1O00548 723 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CRXO43186 299 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 BTF3P20290 206 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 MRPL54Q6P161 138 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 PCSK4Q6UW60 755 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TUBD1Q9UJT1 453 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 RNF115Q9Y4L5 304 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 SIP14410 1827 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 POLEQ07864 2286 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TMEM189A5PLL7 270 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CEBPDP49716 269 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CD200R1LQ6Q8B3 271 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 Q6ZT83 130 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TAF15Q92804 592 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 RSG1Q9BU20 258 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 FAM206AQ9NX38 181 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 PAM16Q9Y3D7 125 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 LOC389332A0A1B0GUA5 103 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TM4SF5O14894 197 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 UCP3P55916 312 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 ZNF146Q15072 292 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 C1orf100Q5SVJ3 147 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 AMMECR1LQ6DCA0 310 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 QTRT1Q9BXR0 403 aaKnown RBP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 CXorf65A6NEN9 183 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 SYNGR3O43761 229 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 FOXH1O75593 365 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 COX6A1P12074 109 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 RPS11P62280 158 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TNFRSF9Q07011 255 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 FAM106AQ4KMX7 169 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 NSUN5P2Q63ZY6 315 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 DDB2Q92466 427 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 DLL3Q9NYJ7 618 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 IL36RNQ9UBH0 155 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 B9A039 149 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 TIMM23BQ5SRD1 257 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 OR51G1Q8NGK1 321 aa4.7□□□□□ -1.66
VPS13C-204ENST00000395898 DYRK2Q92630 601 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms