RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 COX7A1P24310 79 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 UCP1P25874 307 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 HTR1DP28221 377 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 LGALS4P56470 323 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 TMEM187Q14656 261 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 ODF3L1Q8IXM7 274 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 GLYATL2Q8WU03 294 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 TMEM56Q96MV1 263 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 PRR13Q9NZ81 148 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 TMEM56-RWDD3S4R434 201 aa11.16□□□□□ -0.62
VAPB-202ENST00000395802 J3QLI3 93 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 CCSO14618 274 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 RBFOX2O43251 390 aaKnown RBP eCLIP11.15□□□□□ -0.628e-6■■□□□ 11.5
VAPB-202ENST00000395802 CDS2O95674 445 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 RRASP10301 218 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 MMP9P14780 707 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 UBE2E1P51965 193 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 EIF4EBP1Q13541 118 aaPredicted RBP11.15□□□□□ -0.62
VAPB-202ENST00000395802 RPL39P5Q59GN2 51 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 TP53RKQ96S44 253 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 AIFM2Q9BRQ8 373 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 HIF1ANQ9NWT6 349 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 AUP1Q9Y679 476 aa11.15□□□□□ -0.62
VAPB-202ENST00000395802 GAPDHP04406 335 aaKnown RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 ARHGDIBP52566 201 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 RTL8BQ17RB0 113 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 SP6Q3SY56 376 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 MINOS1Q5TGZ0 78 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 LAMTOR1Q6IAA8 161 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 CCDC144NLQ6NUI1 221 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 TGIF2LXQ8IUE1 241 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 SPAG16Q8N0X2 631 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 RBPMSQ93062 196 aaKnown RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 RPEQ96AT9 228 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 MSI2Q96DH6 328 aaKnown RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 ZNF251Q9BRH9 671 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 PLSCR3Q9NRY6 295 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 DPM3Q9P2X0 92 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 TMED3Q9Y3Q3 217 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 TBL2Q9Y4P3 447 aaKnown RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 MINOS1-NBL1R4GNA1 71 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 OOSP1A8MZH6 123 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 APOA2P02652 100 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 MC5RP33032 325 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 RAB13P51153 203 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 CYCSP99999 105 aaKnown RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 TMEM249Q2WGJ8 235 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 UTF1Q5T230 341 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 DHRS7BQ6IAN0 325 aaPredicted RBP11.14□□□□□ -0.63
VAPB-202ENST00000395802 KRTAP1-3Q8IUG1 177 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 C9orf62Q8N4C0 152 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 OR4P4Q8NGL7 312 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 OR4S2Q8NH73 311 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 C7orf69Q9H7B7 122 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 BOLA1Q9Y3E2 137 aa11.14□□□□□ -0.63
VAPB-202ENST00000395802 MAP1AP78559 2803 aaPredicted RBP11.13□□□□□ -0.63
VAPB-202ENST00000395802 ITPR2Q14571 2701 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 ODF3BA8MYP8 253 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 HPRT1P00492 218 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 TGFAP01135 160 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 HOXB4P17483 251 aaPredicted RBP11.13□□□□□ -0.63
VAPB-202ENST00000395802 VDAC1P21796 283 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 MIDNQ504T8 468 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 TMEM268Q5VZI3 342 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 GSG1LQ6UXU4 331 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 GRPEL2Q8TAA5 225 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 ST6GALNAC6Q969X2 333 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 PDCD10Q9BUL8 212 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 MED13LQ71F56 2210 aa11.13□□□□□ -0.63
VAPB-202ENST00000395802 WNK2Q9Y3S1 2297 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CREBBPQ92793 2442 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 LINC00473A8K010 186 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 PROP1O75360 226 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 ADAP1O75689 374 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CYB5R2Q6BCY4 276 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 TEX29Q8N6K0 151 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 RNASE11Q8TAA1 199 aaKnown RBP11.12□□□□□ -0.63
VAPB-202ENST00000395802 LHX4Q969G2 390 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 RRNAD1Q96FB5 475 aaKnown RBP11.12□□□□□ -0.63
VAPB-202ENST00000395802 TBX15Q96SF7 602 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 GPHA2Q96T91 129 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 SPIN2AQ99865 258 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 SPIN2BQ9BPZ2 258 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 PLEKHA2Q9HB19 425 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CSMD1Q96PZ7 3565 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 C5orf51A6NDU8 294 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 RNASEK-C17orf49H0YIS7 233 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 FCGR3BO75015 233 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CT45A6P0DMU7 189 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CT45A5P0DMU8 189 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 CT45A7P0DMV0 189 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 RPL30P62888 115 aaKnown RBP11.12□□□□□ -0.63
VAPB-202ENST00000395802 ZNF816Q0VGE8 651 aaPredicted RBP11.12□□□□□ -0.63
VAPB-202ENST00000395802 GPR157Q5UAW9 335 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 PDPNQ86YL7 162 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 FAM219AQ8IW50 185 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 OR8H3Q8N146 312 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 WFDC11Q8NEX6 87 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 C5orf30Q96GV9 206 aa11.12□□□□□ -0.63
VAPB-202ENST00000395802 SEC22AQ96IW7 307 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms