RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SSTR5P35346 364 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 Q0VFX4 171 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 OR51G1Q8NGK1 321 aa13.68□□□□□ -0.22
PCDH1-203ENST00000394536 HOXB1P14653 301 aaPredicted RBP13.67□□□□□ -0.22
PCDH1-203ENST00000394536 ERVFC1-1P60608 527 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 ARL16Q0P5N6 197 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 EDARADDQ8WWZ3 215 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 DCTN5Q9BTE1 182 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 PLCE1Q9P212 2302 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 IGLV3-1P01715 115 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 NTF3P20783 257 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 LINC00205P59089 165 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 COL10A1Q03692 680 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 ABLIM2Q6H8Q1 611 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 UBALD2Q8IYN6 164 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 POM121L2Q96KW2 1035 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 ELOVL1Q9BW60 279 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 B3GALT5-AS1P59052 145 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 TFF3Q07654 80 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 LRRC75BQ2VPJ9 315 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 SAXO1Q8IYX7 474 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 OR1P1Q8NH06 330 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 LRFN3Q9BTN0 628 aa13.67□□□□□ -0.22
PCDH1-203ENST00000394536 ATP6V1FQ16864 119 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 C1orf210Q8IVY1 113 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 OR4X1Q8NH49 305 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 DECR2Q9NUI1 292 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 MED13Q9UHV7 2174 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 A0A087WWC5 75 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 ODAMA1E959 279 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 SP1P08047 785 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 CYC1P08574 325 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 GNG10P50151 68 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 TCL1AP56279 114 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 CDPF1Q6NVV7 123 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 IGHV3OR15-7A0A075B7D8 119 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 C17orf98A8MV24 154 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 HOXA6P31267 233 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 SOX8P57073 446 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 KRTDAPP60985 99 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 SLC35B1P78383 322 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 HOXA4Q00056 320 aaPredicted RBP13.66□□□□□ -0.22
PCDH1-203ENST00000394536 IQCJQ1A5X6 159 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF324BQ6AW86 544 aaPredicted RBP13.66□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF703Q9H7S9 590 aaPredicted RBP13.66□□□□□ -0.22
PCDH1-203ENST00000394536 GTF3C1Q12789 2109 aa13.66□□□□□ -0.22
PCDH1-203ENST00000394536 OOEPA6NGQ2 149 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 IRF2P14316 349 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 FOXL2NBQ6ZUU3 175 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 LYG1Q8N1E2 194 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 TMEM105Q8N8V8 129 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 LSM10Q969L4 123 aaKnown RBP13.65□□□□□ -0.22
PCDH1-203ENST00000394536 PGPEP1LA6NFU8 196 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 KBTBD11O94819 623 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 NDUFB7P17568 137 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 CD1BP29016 333 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 RPP25LQ8N5L8 163 aaKnown RBP13.65□□□□□ -0.22
PCDH1-203ENST00000394536 LEAP2Q969E1 77 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 CACNA1BQ00975 2339 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 C12orf77C9JDV5 145 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 IGKV1-5P01602 117 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 IGHV2-5P01817 119 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 ZNF83P51522 516 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 UCP2P55851 309 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 C21orf62-AS1Q17RA5 79 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 FAM53AQ6NSI3 398 aaPredicted RBP13.65□□□□□ -0.22
PCDH1-203ENST00000394536 OR8G5Q8NG78 346 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 ZPBPQ9BS86 351 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 MANBALQ9NQG1 85 aa13.65□□□□□ -0.22
PCDH1-203ENST00000394536 C1QTNF9BB2RNN3 333 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 ASCL4Q6XD76 172 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 P2RX4Q99571 388 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 FCN1O00602 326 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 HRASP01112 189 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 HIST1H1BP16401 226 aaKnown RBP13.64□□□□□ -0.23
PCDH1-203ENST00000394536 MIC13Q5XKP0 118 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 CRIP3Q6Q6R5 217 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 DBX2Q6ZNG2 339 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 LINC00596Q86U02 117 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 HIST3H2BBQ8N257 126 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 ABHD12Q8N2K0 398 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 EGLN1Q9GZT9 426 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 FOXJ2Q9P0K8 574 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 LY6G6EA0A0G2JKS1 128 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 M0R1B8 84 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 LHX2P50458 406 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 GCSAMLQ5JQS6 135 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 PSMG3Q9BT73 122 aaPredicted RBP13.64□□□□□ -0.23
PCDH1-203ENST00000394536 FKBP11Q9NYL4 201 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 U3KQA8 63 aa13.64□□□□□ -0.23
PCDH1-203ENST00000394536 GRIFINA4D1Z8 144 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 B4E171 279 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 TSPAN7P41732 249 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 PAX9P55771 341 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 LYPD6BQ8NI32 183 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 LRRC30A6NM36 301 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 WNT5AP41221 380 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 OR4P4Q8NGL7 312 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 PKIBQ9C010 78 aa13.63□□□□□ -0.23
PCDH1-203ENST00000394536 CFAP54Q96N23 3096 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms