RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 S1PR2O95136 353 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 G6PCP35575 357 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 ZNF816Q0VGE8 651 aaPredicted RBP17.91■□□□□ 0.46
TRIM54-202ENST00000380075 TMEM14EPQ6UXP3 125 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 THNSL2Q86YJ6 484 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 LILRB2Q8N423 598 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 RND1Q92730 232 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 RBKSQ9H477 322 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 OR6C3Q9NZP0 311 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 RFNGQ9Y644 331 aa17.91■□□□□ 0.46
TRIM54-202ENST00000380075 C17orf98A8MV24 154 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 KRASP01116 189 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 CTRB1P17538 263 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 SERF2P84101 59 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 LRRC75BQ2VPJ9 315 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 SPANXN5Q5MJ07 72 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 CTRB2Q6GPI1 263 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 ITLN1Q8WWA0 313 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 CIB3Q96Q77 187 aaPredicted RBP17.9■□□□□ 0.46
TRIM54-202ENST00000380075 ABHD14AQ9BUJ0 271 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 PSG11Q9UQ72 335 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 ATP6V1G2-DDX39BF2Z307 99 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 F2RL2O00254 374 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 GPR37O15354 613 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 SPRY3O43610 288 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 BRWD1-AS2P59051 145 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 SRSF1Q07955 248 aaKnown RBP eCLIP17.9■□□□□ 0.46
TRIM54-202ENST00000380075 VHLLQ6RSH7 139 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 SSX8Q7RTT4 187 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 NUP37Q8NFH4 326 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 RFESDQ8TAC1 157 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 FAM222BQ8WU58 562 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 ESRP2Q9H6T0 727 aaKnown RBP17.9■□□□□ 0.46
TRIM54-202ENST00000380075 ELOVL5Q9NYP7 299 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 IL19Q9UHD0 177 aa17.9■□□□□ 0.46
TRIM54-202ENST00000380075 IGHV3-43A0A0B4J1X8 118 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 SCAF4O95104 1147 aaKnown RBP17.89■□□□□ 0.45
TRIM54-202ENST00000380075 LY86O95711 162 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 IGHV3-43DP0DP04 118 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 NFYBP25208 207 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 CD40P25942 277 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 ATP6V1FQ16864 119 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 Q3ZCU0 254 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 FAM53AQ6NSI3 398 aaPredicted RBP17.89■□□□□ 0.45
TRIM54-202ENST00000380075 H2BFWTQ7Z2G1 175 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 HAPLN4Q86UW8 402 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 ZNF561Q8N587 486 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 C14orf79Q96F83 325 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 GNG12Q9UBI6 72 aa17.89■□□□□ 0.45
TRIM54-202ENST00000380075 ITGB1BP1O14713 200 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 ST8SIA5O15466 376 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 ZG16O60844 167 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 TNFSF4P23510 183 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 GPR12P47775 334 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 FAM27E3Q08E93 113 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 ARL16Q0P5N6 197 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 MORN2Q502X0 79 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 OR2B11Q5JQS5 317 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 BTNL3Q6UXE8 466 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 RNF7Q9UBF6 113 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 FAM90A9PA6NNJ1 464 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 RHEBQ15382 184 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 C15orf54Q8N8G6 183 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 DCTN5Q9BTE1 182 aa17.88■□□□□ 0.45
TRIM54-202ENST00000380075 MRPL37Q9BZE1 423 aaKnown RBP17.88■□□□□ 0.45
TRIM54-202ENST00000380075 WDR61Q9GZS3 305 aaKnown RBP17.88■□□□□ 0.45
TRIM54-202ENST00000380075 CHD3Q12873 2000 aaKnown RBP17.87■□□□□ 0.45
TRIM54-202ENST00000380075 BMP5P22003 454 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 CCL20P78556 96 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 SLC38A11Q08AI6 406 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 ZNF506Q5JVG8 444 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 Q8TCH9 128 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 SFT2D1Q8WV19 159 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 PINX1Q96BK5 328 aaKnown RBP17.87■□□□□ 0.45
TRIM54-202ENST00000380075 AIFM2Q9BRQ8 373 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 TUBA4BQ9H853 241 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 TIMM9Q9Y5J7 89 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 TENM4Q6N022 2769 aa17.87■□□□□ 0.45
TRIM54-202ENST00000380075 COL12A1Q99715 3063 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 KIAA2026Q5HYC2 2103 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 IGHV3OR15-7A0A075B7D8 119 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 LINC00473A8K010 186 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 RBFOX2O43251 390 aaKnown RBP eCLIP17.86■□□□□ 0.45
TRIM54-202ENST00000380075 HSPB1P04792 205 aaKnown RBP17.86■□□□□ 0.45
TRIM54-202ENST00000380075 DUTP33316 252 aaKnown RBP17.86■□□□□ 0.45
TRIM54-202ENST00000380075 TNFAIP6P98066 277 aaPredicted RBP17.86■□□□□ 0.45
TRIM54-202ENST00000380075 SOHLH1Q5JUK2 328 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 SDSLQ96GA7 329 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 GAB2Q9UQC2 676 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 HELZ2Q9BYK8 2649 aaKnown RBP17.86■□□□□ 0.45
TRIM54-202ENST00000380075 A0A1B0GV50 99 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 DEFB108AA8MXU0 73 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 RAB7AP51149 207 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 CDSNQ15517 529 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 AWAT1Q58HT5 328 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 TMEM108Q6UXF1 575 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 RPS10P5Q9NQ39 176 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 MLXQ9UH92 298 aa17.86■□□□□ 0.45
TRIM54-202ENST00000380075 PCNX1Q96RV3 2341 aa17.85■□□□□ 0.45
TRIM54-202ENST00000380075 HPRT1P00492 218 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms