RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SSMEM1Q8WWF3 244 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 LINC00052Q96N35 136 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 TMEM106BQ9NUM4 274 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 TRAV24A0A0B4J272 114 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 HNF1AP20823 631 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 LY6DQ14210 128 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 GAB2Q9UQC2 676 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF729A6NN14 1252 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 C17orf100A8MU93 164 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MPTX1A8MV57 137 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 S1PR2O95136 353 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 HLA-GP17693 338 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 RPL11P62913 178 aaKnown RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 TMEM42Q69YG0 159 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 ETFRF1Q6IPR1 90 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 DOLPP1Q86YN1 238 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 OR10A7Q8NGE5 316 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF596Q8TC21 504 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 IL22RA2Q969J5 263 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 VKORC1Q9BQB6 163 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MBD3L4A6NDZ8 208 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MBD3L3A6NE82 208 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MBD3L5A6NJ08 208 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 OR10J4P0C629 311 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 NTF4P34130 210 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 NBL1P41271 181 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MBD3L2Q8NHZ7 208 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-202ENST00000377797 FAM122AQ96E09 287 aa12.26□□□□□ -0.45
TCOF1-202ENST00000377797 MARCH11A6NNE9 402 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 F8VVB4 439 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 F8VWA3 439 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 MMP9P14780 707 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 TMEM41BQ5BJD5 291 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF429Q86V71 674 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 ANGPTL6Q8NI99 470 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 TVP23CQ96ET8 276 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 RSRP1Q9BUV0 290 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 TMEM218A2RU14 115 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 APELAP0DMC3 54 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 BRS3P32247 399 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 RHOBP62745 196 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 LRP11Q86VZ4 500 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 ZDHHC16Q969W1 377 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 PPP1R14DQ9NXH3 145 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 K7EQM0 130 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 PITX3O75364 302 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 DKK1O94907 266 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 TFF1P04155 84 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 ERVFRD-1P60508 538 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 MMDQ15546 238 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 NECAP1Q8NC96 275 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 DOK5Q9P104 306 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 LILRA1O75019 489 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF737O75373 536 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 C1QL1O75973 258 aa12.25□□□□□ -0.45
TCOF1-202ENST00000377797 H1FOOQ8IZA3 346 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-202ENST00000377797 FAM208BQ5VWN6 2430 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-202ENST00000377797 RBFOX3A6NFN3 312 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 CLEC12BQ2HXU8 276 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 RNF138Q8WVD3 245 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 BTF3L4Q96K17 158 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 OR51B2Q9Y5P1 312 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.24□□□□□ -0.459e-7■■■■□ 22.6
TCOF1-202ENST00000377797 ACACBO00763 2458 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 ALPK3Q96L96 1907 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 PTBP3O95758 552 aaKnown RBP12.24□□□□□ -0.45
TCOF1-202ENST00000377797 QRFPP83859 136 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 LAMTOR1Q6IAA8 161 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 RTN4RL2Q86UN3 420 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 C12orf57Q99622 126 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 PATZ1Q9HBE1 687 aaKnown RBP12.24□□□□□ -0.45
TCOF1-202ENST00000377797 SLC25A15Q9Y619 301 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 ADAMTS9Q9P2N4 1935 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 PPP5D1E7EU14 171 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 UCP1P25874 307 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 TCF15Q12870 199 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 CABLES2Q9BTV7 478 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 IGKV1D-13A0A0B4J2D9 117 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 IGKV1-13P0DP09 117 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 SPCS3P61009 180 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 MSRB2Q9Y3D2 182 aa12.24□□□□□ -0.45
TCOF1-202ENST00000377797 GTF3AQ92664 365 aaKnown RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 RNASE6Q93091 150 aaKnown RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 MS4A7Q9GZW8 240 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 PARP11Q9NR21 331 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 KIAA1549LQ6ZVL6 1849 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 MSGN1A6NI15 193 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 ERVH48-1M5A8F1 160 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 ARF6P62330 175 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 RSG1Q9BU20 258 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 COL25A1Q9BXS0 654 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 RBKSQ9H477 322 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 LYRM2Q9NU23 88 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-202ENST00000377797 ZNF835Q9Y2P0 537 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 HILPDAQ9Y5L2 63 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 TRBV6-7A0A0A0MS04 114 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 PPIAL4CA0A0B4J2A2 164 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 PPIAL4GP0DN37 164 aa12.23□□□□□ -0.45
TCOF1-202ENST00000377797 RAB4AP20338 218 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms