RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM90A24PP0C7X0 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 REG1BP48304 166 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CKS1BP61024 79 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 RNF182Q8N6D2 247 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CLDND2Q8NHS1 167 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SPATA3Q8NHX4 192 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TMEM126AQ9H061 195 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ABCG5Q9H222 651 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 NUP205Q92621 2012 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TGIF2-C20orf24A0A0A6YYL0 155 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IGF2P01344 180 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IGKV3-20P01619 116 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PFN1P07737 140 aaKnown RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 SPI1P17947 270 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SLURP1P55000 103 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CLDN20P56880 219 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SERF2P84101 59 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PAX8Q06710 450 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZNF146Q15072 292 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 COX19Q49B96 90 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TEX261Q6UWH6 196 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZNF818PQ6ZRF7 136 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZNF683Q8IZ20 524 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 NKAPP1Q8N9T2 125 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 LYZL4Q96KX0 146 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CITED2Q99967 270 aaPredicted RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZDHHC18Q9NUE0 388 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 AK6Q9Y3D8 172 aaKnown RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 U3KQ87 197 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 C5P01031 1676 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ARID1AO14497 2285 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 COL18A1P39060 1754 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TRAV34A0A0B4J273 112 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 RBFOX3A6NFN3 312 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PLPP3O14495 311 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 DIRAS1O95057 198 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ATP5G1P05496 136 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CCL2P13500 99 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PMELP40967 661 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ATP5G3P48201 142 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ENDOGQ14249 297 aaKnown RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 SS18Q15532 418 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CEACAM21Q3KPI0 293 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SLC25A34Q6PIV7 304 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 APOOLQ6UXV4 268 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 MGLLQ99685 303 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 GGTLC1Q9BX51 225 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 GORASP2Q9H8Y8 452 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 U3KQK5 164 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 MAP2P11137 1827 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 A0A0A6YYD5 115 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 C7orf66A4D0T2 115 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 C15orf61A6NNL5 157 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 PPP6CO00743 305 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF737O75373 536 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 KLF7O75840 302 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 RPL5P46777 297 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 RPS27AP62979 156 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 MYO7BQ6PIF6 2116 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SLC22A18ASQ8N1D0 253 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 NXF2Q9GZY0 626 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 PDFQ9HBH1 243 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 MRPL16Q9NX20 251 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 CNOT2Q9NZN8 540 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF257Q9Y2Q1 563 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SSC5DA1L4H1 1573 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 LINC01549A6NIU2 74 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TRDCB7Z8K6 153 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 FAM229AH3BQW9 127 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SIGLEC5O15389 551 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 FCMRO60667 390 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CA1P00915 261 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 DEFB130BP0DP73 79 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 DEFB130AP0DP74 79 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SULT1A1P50225 295 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 DEFA6Q01524 100 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TWIST1Q15672 202 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 PEAR1Q5VY43 1037 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 VMO1Q7Z5L0 202 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR11H4Q8NGC9 324 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR13C6PQ8NH95 151 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CNRIP1Q96F85 164 aaPredicted RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 FAM210BQ96KR6 192 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TUBB1Q9H4B7 451 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CMC2Q9NRP2 79 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 MED9Q9NWA0 146 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 IGHV3-72A0A0B4J1Y9 119 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 ZNF98A6NK75 572 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SHISA8B8ZZ34 492 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 IGLV3-25P01717 112 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 SCGB1C2P0DMR2 95 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CNTFRP26992 372 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 HTR1FP30939 366 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 CX3CL1P78423 397 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 MRPL23Q16540 153 aaKnown RBP3.45□□□□□ -1.86
USH2A-202ENST00000366942 UQCC3Q6UW78 93 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 VN1R4Q7Z5H5 301 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 TBC1D26Q86UD7 250 aa3.45□□□□□ -1.86
USH2A-202ENST00000366942 OR2K2Q8NGT1 345 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms