RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ECSCRQ19T08 205 aa13.76□□□□□ -0.21
HDDC3-201ENST00000330334 MOGAT2Q3SYC2 334 aa13.76□□□□□ -0.21
HDDC3-201ENST00000330334 ASPHD1Q5U4P2 390 aa13.76□□□□□ -0.21
HDDC3-201ENST00000330334 PPP1R27Q86WC6 154 aa13.76□□□□□ -0.21
HDDC3-201ENST00000330334 OR10J5Q8NHC4 309 aa13.76□□□□□ -0.21
HDDC3-201ENST00000330334 FLYWCH2Q96CP2 140 aaKnown RBP13.76□□□□□ -0.21
HDDC3-201ENST00000330334 YTHDF1Q9BYJ9 559 aaKnown RBP13.76□□□□□ -0.21
HDDC3-201ENST00000330334 LSM4Q9Y4Z0 139 aaKnown RBP13.76□□□□□ -0.21
HDDC3-201ENST00000330334 GSTT2P0CG29 244 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 GSTT2BP0CG30 244 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 GNB3P16520 340 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 FGF9P31371 208 aaPredicted RBP13.75□□□□□ -0.21
HDDC3-201ENST00000330334 ZNF260Q3ZCT1 412 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 ACTBL2Q562R1 376 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 SLA2Q9H6Q3 261 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDDC3-201ENST00000330334 TPSG1Q9NRR2 321 aa13.75□□□□□ -0.21
HDDC3-201ENST00000330334 M0R1X1 148 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 ARPC1BO15143 372 aaKnown RBP13.74□□□□□ -0.21
HDDC3-201ENST00000330334 BET1O15155 118 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 OR8U9P0C7N5 309 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 NHLRC4P0CG21 123 aaPredicted RBP13.74□□□□□ -0.21
HDDC3-201ENST00000330334 CD40LGP29965 261 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 LINC00205P59089 165 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 IGSF11Q5DX21 431 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 C22orf42Q6IC83 251 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 ZNF429Q86V71 674 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 NR2C2APQ86WQ0 139 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 SPARTQ8N0X7 666 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 FCGR1BQ92637 280 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 SDHAF2Q9NX18 166 aa13.74□□□□□ -0.21
HDDC3-201ENST00000330334 CA2P00918 260 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 LGALS1P09382 135 aaKnown RBP13.73□□□□□ -0.21
HDDC3-201ENST00000330334 ECI1P42126 302 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 UNQ5815/PRO19632Q6UWF5 114 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 TPRA1Q86W33 373 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 LFNGQ8NES3 379 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 ARPC1AQ92747 370 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 TMEM68Q96MH6 324 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 OR5B12Q96R08 314 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 Q9H521 79 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 SLC35D1Q9NTN3 355 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 A3GALT2U3KPV4 340 aa13.73□□□□□ -0.21
HDDC3-201ENST00000330334 NOTOA8MTQ0 251 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 LINC01619G3V211 115 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 H3BUA1 57 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 OVOL1O14753 267 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 BRI3O95415 125 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 ATP6V1G2O95670 118 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 IGLV2-23P01705 113 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 CRYGBP07316 175 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 RRASP10301 218 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 DTYMKP23919 212 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 TALDO1P37837 337 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 FXYD3Q14802 87 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 ABHD5Q8WTS1 349 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 DCUN1D4Q92564 292 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 RHOVQ96L33 236 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 CLCC1Q96S66 551 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 OR2D2Q9H210 308 aa13.72□□□□□ -0.21
HDDC3-201ENST00000330334 ZNF230Q9UIE0 474 aaPredicted RBP13.72□□□□□ -0.21
HDDC3-201ENST00000330334 ZNF256Q9Y2P7 627 aaPredicted RBP13.72□□□□□ -0.21
HDDC3-201ENST00000330334 A0A0B4J203 849 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 SLC25A17O43808 307 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 SCGNO76038 276 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 HSPB1P04792 205 aaKnown RBP13.71□□□□□ -0.21
HDDC3-201ENST00000330334 ARFRP1Q13795 201 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 TMEM177Q53S58 311 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 C11orf87Q6NUJ2 197 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 H1FOOQ8IZA3 346 aaPredicted RBP13.71□□□□□ -0.21
HDDC3-201ENST00000330334 DLX4Q92988 240 aaPredicted RBP13.71□□□□□ -0.21
HDDC3-201ENST00000330334 ADTRPQ96IZ2 230 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 GINS4Q9BRT9 223 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 FAM103A1Q9BTL3 118 aaKnown RBP13.71□□□□□ -0.21
HDDC3-201ENST00000330334 ATG5Q9H1Y0 275 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 DCSTAMPQ9H295 470 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 TXNL4BQ9NX01 149 aaKnown RBP13.71□□□□□ -0.21
HDDC3-201ENST00000330334 STUB1Q9UNE7 303 aa13.71□□□□□ -0.21
HDDC3-201ENST00000330334 A0A075B6Q4 140 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 CTXN2P0C2S0 81 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 SSBP2P81877 361 aaPredicted RBP13.7□□□□□ -0.22
HDDC3-201ENST00000330334 CBX3Q13185 183 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 RTL8BQ17RB0 113 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 CDNFQ49AH0 187 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 HACD4Q5VWC8 232 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 PRR25Q96S07 402 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 ALX4Q9H161 411 aaPredicted RBP13.7□□□□□ -0.22
HDDC3-201ENST00000330334 SORL1Q92673 2214 aa13.7□□□□□ -0.22
HDDC3-201ENST00000330334 SNRPBP14678 240 aaKnown RBP13.69□□□□□ -0.22
HDDC3-201ENST00000330334 PSMB9P28065 219 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 PITPNAQ00169 270 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 ACSM6Q6P461 480 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 CASTOR1Q8WTX7 329 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 MAFIPQ8WZ33 124 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 DDB2Q92466 427 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 C5orf30Q96GV9 206 aa13.69□□□□□ -0.22
HDDC3-201ENST00000330334 RBM7Q9Y580 266 aaKnown RBP13.69□□□□□ -0.22
HDDC3-201ENST00000330334 IGHV4OR15-8A0A075B7B6 117 aa13.68□□□□□ -0.22
HDDC3-201ENST00000330334 A0A087WW49 117 aa13.68□□□□□ -0.22
HDDC3-201ENST00000330334 A0A0G2JLM5 398 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms