RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SIX6O95475 246 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 HPRT1P00492 218 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 IGHV2-5P01817 119 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 IGHV4-39P01824 125 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 RNF224P0DH78 156 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 SAA2P0DJI9 122 aaPredicted RBP5.1□□□□□ -1.59
LIG3-206ENST00000586058 IGHV1-8P0DP01 117 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 TPRP12270 2363 aaKnown RBP5.1□□□□□ -1.59
LIG3-206ENST00000586058 FOSL1P15407 271 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 SLC25A16P16260 332 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 CCL3L1P16619 93 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 EPHA1P21709 976 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 RAB13P51153 203 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 LGALS4P56470 323 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 LOXL3P58215 753 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 C17orf58Q2M2W7 97 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 ANKRD55Q3KP44 614 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 SP6Q3SY56 376 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 GGNBP1Q5YKI7 109 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 NCR3LG1Q68D85 454 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 TMEM200BQ69YZ2 307 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 DHRS7BQ6IAN0 325 aaPredicted RBP5.1□□□□□ -1.59
LIG3-206ENST00000586058 SLC25A48Q6ZT89 311 aaKnown RBP5.1□□□□□ -1.59
LIG3-206ENST00000586058 H2BFWTQ7Z2G1 175 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 TGIF2LXQ8IUE1 241 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 SPAG16Q8N0X2 631 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 C8orf31Q8N9H6 132 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 DMBX1Q8NFW5 382 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 PPP1R1CQ8WVI7 109 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 DCUN1D4Q92564 292 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 ABHD14BQ96IU4 210 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 OR2A7Q96R45 310 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 BPESC1Q9GZL8 116 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 HEXA-AS1Q9H8Q6 139 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 LINC00574Q9H8X3 128 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 BEX4Q9NWD9 120 aaPredicted RBP5.1□□□□□ -1.59
LIG3-206ENST00000586058 SDHAF2Q9NX18 166 aa5.1□□□□□ -1.59
LIG3-206ENST00000586058 ABCA4P78363 2273 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 KANTRA0A1W2PQU2 76 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 C17orf98A8MV24 154 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 F5H0A9 414 aaPredicted RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 H7C2Y5 167 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 J3QR06 171 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 ARPC5O15511 151 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 ST8SIA3O43173 380 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 RBFOX2O43251 390 aaKnown RBP eCLIP5.09□□□□□ -1.59
LIG3-206ENST00000586058 FCGR3BO75015 233 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 MED6O75586 246 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 SCAF4O95104 1147 aaKnown RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 HRASP01112 189 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 IGHV3-7P01780 117 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 SLC25A6P12236 298 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 PSMB6P28072 239 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 NKX2-1P43699 371 aaPredicted RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 GZMKP49863 264 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 H2BFSP57053 126 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 ZNF816Q0VGE8 651 aaPredicted RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 OR2B11Q5JQS5 317 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 C11orf87Q6NUJ2 197 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 C16orf54Q6UWD8 224 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 TCF23Q7RTU1 214 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 LDLRAD3Q86YD5 345 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 FOXRED2Q8IWF2 684 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 ABHD12Q8N2K0 398 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 ZBTB8BQ8NAP8 495 aaPredicted RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 CLDND2Q8NHS1 167 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 GLYATL2Q8WU03 294 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 LSM10Q969L4 123 aaKnown RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 RPEQ96AT9 228 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 SEC22AQ96IW7 307 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 C18orf12Q96KH6 178 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 TMEM56Q96MV1 263 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 GSX2Q9BZM3 304 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 IFI27L2Q9H2X8 130 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 PRR13Q9NZ81 148 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 GAB2Q9UQC2 676 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 LSM5Q9Y4Y9 91 aaKnown RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 HSPB11Q9Y547 144 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 KPTNQ9Y664 436 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 TMEM56-RWDD3S4R434 201 aa5.09□□□□□ -1.59
LIG3-206ENST00000586058 SPTBN1Q01082 2364 aaKnown RBP5.09□□□□□ -1.59
LIG3-206ENST00000586058 IGSF10Q6WRI0 2623 aa5.09□□□□□ -1.6
LIG3-206ENST00000586058 A0A087X0M5 115 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 IGHV2-26A0A0B4J1V2 119 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 IGHV2-70DA0A0C4DH43 119 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 A0A0D9SG52 128 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 A0A1B0GU03 582 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 A0A1B0GX30 115 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 A0A1W2PPE3 182 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 CLEC18AA5D8T8 446 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 MARCH11A6NNE9 402 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 HMSDA8MTL9 139 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 A8MXK9 166 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 E5RGE8 158 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 SMLR1H3BR10 107 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 TNFRSF13BO14836 293 aaPredicted RBP5.08□□□□□ -1.6
LIG3-206ENST00000586058 GPR137BO60478 399 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 TSC22D2O75157 780 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 NDUFS7O75251 213 aa5.08□□□□□ -1.6
LIG3-206ENST00000586058 OR2F2O95006 317 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms