RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 OR10K2Q6IF99 312 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 GLDNQ6ZMI3 551 aaPredicted RBP16.22■□□□□ 0.19
VPS53-216ENST00000574029 OR5AN1Q8NGI8 311 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 FLYWCH2Q96CP2 140 aaKnown RBP16.22■□□□□ 0.19
VPS53-216ENST00000574029 MGLLQ99685 303 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 RNF5Q99942 180 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 AGMATQ9BSE5 352 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 ACOT13Q9NPJ3 140 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 RNF150Q9ULK6 438 aa16.22■□□□□ 0.19
VPS53-216ENST00000574029 ITGB1BP1O14713 200 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 RBBP9O75884 186 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 LYL1P12980 280 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 HTR2CP28335 458 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 PITPNAQ00169 270 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 TRAM1Q15629 374 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 ACTBL2Q562R1 376 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 C1orf100Q5SVJ3 147 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 LIPKQ5VXJ0 399 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 PPP1R27Q86WC6 154 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 ABHD5Q8WTS1 349 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 RHOVQ96L33 236 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 OR4C12Q96R67 309 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 TMED9Q9BVK6 235 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 TM2D1Q9BX74 207 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 TMEM59Q9BXS4 323 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 PARP12Q9H0J9 701 aaKnown RBP16.21■□□□□ 0.19
VPS53-216ENST00000574029 GAB2Q9UQC2 676 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 WASHC3Q9Y3C0 194 aa16.21■□□□□ 0.19
VPS53-216ENST00000574029 DYNC2H1Q8NCM8 4307 aaKnown RBP16.21■□□□□ 0.18
VPS53-216ENST00000574029 ARPC1BO15143 372 aaKnown RBP16.2■□□□□ 0.18
VPS53-216ENST00000574029 IGHV3-11P01762 117 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 GSTP1P09211 210 aaKnown RBP16.2■□□□□ 0.18
VPS53-216ENST00000574029 HSMCR30P0CW71 290 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 INSL4Q14641 139 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 UNQ5815/PRO19632Q6UWF5 114 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 ZNF562Q6V9R5 426 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 ZNF367Q7RTV3 350 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 LRRTM1Q86UE6 522 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 ABHD14BQ96IU4 210 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 CITED4Q96RK1 184 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 NICN1Q9BSH3 213 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 FAM103A1Q9BTL3 118 aaKnown RBP16.2■□□□□ 0.18
VPS53-216ENST00000574029 SLA2Q9H6Q3 261 aa16.2■□□□□ 0.18
VPS53-216ENST00000574029 H7C2Y5 167 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 PSMA1P25786 263 aaKnown RBP16.19■□□□□ 0.18
VPS53-216ENST00000574029 UNC119Q13432 240 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 GLT8D1Q68CQ7 371 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 MOB1BQ7L9L4 216 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 SPARTQ8N0X7 666 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 LFNGQ8NES3 379 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 KCNG3Q8TAE7 436 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 PHYHIPQ92561 330 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 MS4A10Q96PG2 267 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 TM2D3Q9BRN9 247 aa16.19■□□□□ 0.18
VPS53-216ENST00000574029 CHMP1AQ9HD42 196 aaPredicted RBP16.19■□□□□ 0.18
VPS53-216ENST00000574029 METTL1Q9UBP6 276 aaKnown RBP16.19■□□□□ 0.18
VPS53-216ENST00000574029 TRBV6-6A0A0A6YYG2 114 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 UCHL1P09936 223 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 CD37P11049 281 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 SNRPBP14678 240 aaKnown RBP16.18■□□□□ 0.18
VPS53-216ENST00000574029 TPPP2P59282 170 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 QRFPP83859 136 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 PSG5Q15238 335 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 SRSF7Q16629 238 aaKnown RBP eCLIP16.18■□□□□ 0.18
VPS53-216ENST00000574029 TMEM91Q6ZNR0 172 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 CEACAM19Q7Z692 300 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 Q8N1Y9 231 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 SETD6Q8TBK2 473 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 CLCC1Q96S66 551 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 RIMS4Q9H426 269 aaPredicted RBP16.18■□□□□ 0.18
VPS53-216ENST00000574029 DNAH7Q8WXX0 4024 aa16.18■□□□□ 0.18
VPS53-216ENST00000574029 TMEM14DPA8MWL7 114 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 A8MZ25 164 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 PROP1O75360 226 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 CA2P00918 260 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 IGLV1-51P01701 117 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 TFAP2AP05549 437 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 SRMP19623 302 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 CD40LGP29965 261 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 UBE2UQ5VVX9 321 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 EDARADDQ8WWZ3 215 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 TMEM203Q969S6 136 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 ELOVL1Q9BW60 279 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 C11orf54Q9H0W9 315 aaPredicted RBP16.17■□□□□ 0.18
VPS53-216ENST00000574029 KCNK15Q9H427 330 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 PALMDQ9NP74 551 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 PLEKHJ1Q9NW61 149 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 OR1A1Q9P1Q5 309 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 TENM2Q9NT68 2774 aa16.17■□□□□ 0.18
VPS53-216ENST00000574029 A0A0A6YYD4 124 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 LDLRAD4O15165 306 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 SLC22A1O15245 554 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 HSPA12AO43301 675 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 IGHV4-30-4P0DP06 118 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 ZBTB25P24278 435 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 CEACAM6P40199 344 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 RPS25P62851 125 aaKnown RBP16.16■□□□□ 0.18
VPS53-216ENST00000574029 HAPLN4Q86UW8 402 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 PTX4Q96A99 478 aa16.16■□□□□ 0.18
VPS53-216ENST00000574029 C19orf73Q9NVV2 129 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms