RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IGHV4OR15-8A0A075B7B6 117 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 A0A087WW49 117 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 SOCS1O15524 211 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 SAP30O75446 220 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 GSTP1P09211 210 aaKnown RBP13.2□□□□□ -0.3
CLN3-216ENST00000565316 ZBTB25P24278 435 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 CEACAM6P40199 344 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 HLA-DRB3P79483 266 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 PLGLAQ15195 96 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 PSG5Q15238 335 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 ACTBL2Q562R1 376 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 ACSM6Q6P461 480 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 PPP1R27Q86WC6 154 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 SETD6Q8TBK2 473 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 CASTOR1Q8WTX7 329 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 HDHD3Q9BSH5 251 aaPredicted RBP13.2□□□□□ -0.3
CLN3-216ENST00000565316 RNF150Q9ULK6 438 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 A3GALT2U3KPV4 340 aa13.2□□□□□ -0.3
CLN3-216ENST00000565316 PTGES3LE9PB15 166 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 H7C2Y5 167 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 SLC17A2O00624 439 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 SPNP16150 400 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 TMEM50BP56557 158 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 TMEM91Q6ZNR0 172 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 SBSPONQ8IVN8 264 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 RHOVQ96L33 236 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 URM1Q9BTM9 101 aaKnown RBP13.19□□□□□ -0.3
CLN3-216ENST00000565316 Q9N2K0 584 aa13.19□□□□□ -0.3
CLN3-216ENST00000565316 ARPC1BO15143 372 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 SPDEFO95238 335 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 IGKV1-16P04430 117 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 HSPB1P04792 205 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 SCTP09683 121 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 OR8U9P0C7N5 309 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 SNRPBP14678 240 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 ARSBP15848 533 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 TPBGQ13641 420 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 P2RY14Q15391 338 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 MED22Q15528 200 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 LIPKQ5VXJ0 399 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 UNQ5815/PRO19632Q6UWF5 114 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 LFNGQ8NES3 379 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 ABHD5Q8WTS1 349 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 ARPC1AQ92747 370 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 TSNAXQ99598 290 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 FAM103A1Q9BTL3 118 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 C12orf4Q9NQ89 552 aa13.18□□□□□ -0.3
CLN3-216ENST00000565316 METTL1Q9UBP6 276 aaKnown RBP13.18□□□□□ -0.3
CLN3-216ENST00000565316 IGKV1-6A0A0C4DH72 117 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 HSPA12AO43301 675 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 GP9P14770 177 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 ZNF383Q8NA42 475 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 DRAXINQ8NBI3 349 aaPredicted RBP13.17□□□□□ -0.3
CLN3-216ENST00000565316 OR6Q1Q8NGQ2 317 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 UFD1Q92890 307 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 TMEM203Q969S6 136 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 FLYWCH2Q96CP2 140 aaKnown RBP13.17□□□□□ -0.3
CLN3-216ENST00000565316 ARHGAP5-AS1Q96IT6 56 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 VCXQ9H320 206 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 SLA2Q9H6Q3 261 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 SCN3BQ9NY72 215 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 RYR2Q92736 4967 aa13.17□□□□□ -0.3
CLN3-216ENST00000565316 CA2P00918 260 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 IGHV3-11P01762 117 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 TFAP2AP05549 437 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 FRMD6-AS1P0C7T7 363 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 CPEP16870 476 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 LINC00205P59089 165 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 RAB11BQ15907 218 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 PDPNQ86YL7 162 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 MS4A10Q96PG2 267 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 RCHY1Q96PM5 261 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 CLCC1Q96S66 551 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 PECRQ9BY49 303 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 PLGRKTQ9HBL7 147 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 ZNF221Q9UK13 617 aa13.16□□□□□ -0.3
CLN3-216ENST00000565316 AK6Q9Y3D8 172 aaKnown RBP13.16□□□□□ -0.3
CLN3-216ENST00000565316 TRDCB7Z8K6 153 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 LDLRAD4O15165 306 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 CD40LGP29965 261 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 VEGFCP49767 419 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 TPPP2P59282 170 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 RPS16P62249 146 aaKnown RBP13.15□□□□□ -0.3
CLN3-216ENST00000565316 SSBP2P81877 361 aaPredicted RBP13.15□□□□□ -0.3
CLN3-216ENST00000565316 TRAM1Q15629 374 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 PLAC9Q5JTB6 97 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.15□□□□□ -0.3
CLN3-216ENST00000565316 MUC7Q8TAX7 377 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 DUSP21Q9H596 190 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 RDH8Q9NYR8 311 aa13.15□□□□□ -0.3
CLN3-216ENST00000565316 TRIM64CA6NLI5 447 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 H3BUA1 57 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 ARL6IP5O75915 188 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 PSMA1P25786 263 aaKnown RBP13.14□□□□□ -0.31
CLN3-216ENST00000565316 RPS25P62851 125 aaKnown RBP13.14□□□□□ -0.31
CLN3-216ENST00000565316 PITPNAQ00169 270 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 FXYD3Q14802 87 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 OVCH2Q7RTZ1 564 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 OR56B1Q8NGI3 324 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 FAM3DQ96BQ1 224 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms