RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PRRC1Q96M27 445 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 RBP7Q96R05 134 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 NMNAT3Q96T66 252 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 AMELYQ99218 206 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 CGREF1Q99674 301 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 PITX2Q99697 317 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 COPS4Q9BT78 406 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 ZNF426Q9BUY5 554 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 ALG12Q9BV10 488 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 CDCA4Q9BXL8 241 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 PARD6BQ9BYG5 372 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 SLC19A3Q9BZV2 496 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 MAGT1Q9H0U3 335 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 C1orf198Q9H425 327 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 YY1AP1Q9H869 796 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 FN3KRPQ9HA64 309 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 ROPN1Q9HAT0 212 aaPredicted RBP1.79□□□□□ -2.12
SCFD1-219ENST00000556413 ELOVL3Q9HB03 270 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 C12orf10Q9HB07 376 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 INPP5EQ9NRR6 644 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 C19orf12Q9NSK7 152 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 TMEM100Q9NV29 134 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 MRPL22Q9NWU5 206 aaKnown RBP1.79□□□□□ -2.12
SCFD1-219ENST00000556413 NKIRAS1Q9NYS0 192 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 RPUSD1Q9UJJ7 312 aaKnown RBP1.79□□□□□ -2.12
SCFD1-219ENST00000556413 FBXL3Q9UKT7 428 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 MED31Q9Y3C7 131 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 RHBDD3Q9Y3P4 386 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 HILPDAQ9Y5L2 63 aa1.79□□□□□ -2.12
SCFD1-219ENST00000556413 A0A087WUU8 490 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 IGLV1-36A0A0B4J1U3 117 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 A0A0G2JND7 137 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 A0A0G2JRQ6 117 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 A0A1B0GWB2 263 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 TCRBV4S1A1TA0A5B7 111 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 A6NDX4 124 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 FAM183AA6NL82 134 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 M0R135 149 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 MRASO14807 208 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SYNGR1O43759 233 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SERPINA1P01009 418 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 ARG1P05089 322 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 CD14P08571 375 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 MRPL3P09001 348 aaKnown RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 GPX2P18283 190 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SERPINA2P20848 420 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 MDH1P40925 334 aaKnown RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 CD200P41217 278 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 NAA10P41227 235 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 GUCA1AP43080 201 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 VDAC2P45880 294 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 GSSP48637 474 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 CX3CR1P49238 355 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 GPM6AP51674 278 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 HCCSP53701 268 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SPIBQ01892 262 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 FADDQ13158 208 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 DYNC1I2Q13409 638 aaKnown RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 AQP6Q13520 282 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 LAGE3Q14657 143 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SSX2Q16385 188 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 LTC4SQ16873 150 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 LRRC75BQ2VPJ9 315 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 RFX4Q33E94 735 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 KLHL12Q53G59 568 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PRAMEF5Q5TYX0 476 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 STUMQ69YW2 141 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 NANOGP8Q6NSW7 305 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 METAP1DQ6UB28 335 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 WDR82Q6UXN9 313 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 FBXW12Q6X9E4 464 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PLEKHG7Q6ZR37 379 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 DPY19L4Q7Z388 723 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 DCXRQ7Z4W1 244 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 Q8N9W7 124 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PROKR2Q8NFJ6 384 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 OR1M1Q8NGA1 313 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 OR8D4Q8NGM9 314 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 OR13G1Q8NGZ3 307 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PIFOQ8TCI5 191 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 DYDC1Q8WWB3 177 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 LZICQ8WZA0 190 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PIGCQ92535 297 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 APOBEC3DQ96AK3 386 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 RCN3Q96D15 328 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 SDSLQ96GA7 329 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 REEP6Q96HR9 211 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 ERMAPQ96PL5 475 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 OR5B12Q96R08 314 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 CHID1Q9BWS9 393 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 C16orf95Q9H693 158 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 TMEM38AQ9H6F2 299 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 RETNQ9HD89 108 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 ARMC1Q9NVT9 282 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 CMTM6Q9NX76 183 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 THUMPD1Q9NXG2 353 aaKnown RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 PRPF19Q9UMS4 504 aaKnown RBP1.78□□□□□ -2.12
SCFD1-219ENST00000556413 B9D1Q9UPM9 204 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 TENM2Q9NT68 2774 aa1.78□□□□□ -2.12
SCFD1-219ENST00000556413 WNK2Q9Y3S1 2297 aa1.78□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms