RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 GZMHP20718 246 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 FBLP22087 321 aaKnown RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 PTGER1P34995 402 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 PLPPR5Q32ZL2 321 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 OR5P3Q8WZ94 311 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 DAZLQ92904 295 aaKnown RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 ADAT3Q96EY9 351 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 SDSLQ96GA7 329 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 CIB3Q96Q77 187 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 NKX3-1Q99801 234 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 NICN1Q9BSH3 213 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 PBOV1Q9GZY1 135 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZNF703Q9H7S9 590 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 BET1LQ9NYM9 111 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 LAMTOR2Q9Y2Q5 125 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 GOLGA4Q13439 2230 aaKnown RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 SDK1Q7Z5N4 2213 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 CACNA1BQ00975 2339 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 UNC13CQ8NB66 2214 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF705FA8MVS1 300 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 SIRPB1O00241 398 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 MPIG6BO95866 241 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OR5G3P0C626 314 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF705DP0CH99 300 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF705BP0CI00 300 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 COMPP49747 757 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 DAP3P51398 398 aaKnown RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 CLDN18P56856 261 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 LCN6P62502 163 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 RPL19P84098 196 aaKnown RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 MEF2BQ02080 365 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 FUT7Q11130 342 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ABCA11PQ4W5N1 156 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ANKRD37Q7Z713 158 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 IL22RA1Q8N6P7 574 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 TCTEX1D1Q8N7M0 179 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OR10S1Q8NGN2 331 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 TMEM171Q8WVE6 324 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 GPR146Q96CH1 333 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 NUDT11Q96G61 164 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 SMIM7Q9BQ49 75 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 TMEM222Q9H0R3 208 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF319Q9P2F9 582 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 TBL2Q9Y4P3 447 aaKnown RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 IGHV2-26A0A0B4J1V2 119 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 K7ERU9 68 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 IGLC2P0DOY2 106 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 IGLC3P0DOY3 106 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OTX2P32243 289 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PPP1CBP62140 327 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PMCHL1Q16048 86 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 FBLN7Q53RD9 439 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ABHD17BQ5VST6 288 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF880Q6PDB4 577 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PRSS41Q7RTY9 318 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PIP4P2Q8N4L2 257 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 C2orf73Q8N5S3 287 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 OR2AJ1Q8NGZ0 328 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PP6455Q8WZ26 134 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 VN1R1Q9GZP7 353 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 SLC25A10Q9UBX3 287 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 LY96Q9Y6Y9 160 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 USP24Q9UPU5 2620 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 LRP5LA4QPB2 252 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OOEPA6NGQ2 149 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 FAM90A20PA6NIJ5 464 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 P2RY10O00398 339 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 NRASP01111 189 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 KRASP01116 189 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 CT62P0C5K7 136 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 Q0VFX4 171 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ACKR1Q16570 336 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 LRRC10Q5BKY1 277 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 NMSQ5H8A3 153 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OR10J3Q5JRS4 329 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 C19orf35Q6ZS72 473 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ODF3L1Q8IXM7 274 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 FAM58AQ8N1B3 248 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 LYG1Q8N1E2 194 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 BCORP1Q8N888 145 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OR5AU1Q8NGC0 362 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 OR5C1Q8NGR4 320 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PSMF1Q92530 271 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 RPUSD4Q96CM3 377 aaKnown RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 ZNF160Q9HCG1 818 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 PRR13Q9NZ81 148 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 IL36GQ9NZH8 169 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 GNG13Q9P2W3 67 aa4.48□□□□□ -1.69
USP28-213ENST00000544967 ERRFI1Q9UJM3 462 aaPredicted RBP4.48□□□□□ -1.69
USP28-213ENST00000544967 FREM2Q5SZK8 3169 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 WIPF1O43516 503 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 SLC16A7O60669 478 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 HLA-DQA2P01906 255 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 MT-ND6P03923 174 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 MMP7P09237 267 aaPredicted RBP4.47□□□□□ -1.69
USP28-213ENST00000544967 CTLA4P16410 223 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 PI3P19957 117 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 VDAC1P21796 283 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 DYNLT3P51808 116 aa4.47□□□□□ -1.69
USP28-213ENST00000544967 ERVS71-1P61550 626 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms