RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ATP6V0E1O15342 81 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 FABP7O15540 132 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 RGS11O94810 467 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 IGHG4P01861 327 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 HLA-DRB1P01911 266 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 IGKV1-16P04430 117 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 PSMB8P28062 276 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 MMDQ15546 238 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 NEDD8Q15843 81 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 FOXB2Q5VYV0 432 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 SFXN4Q6P4A7 337 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 Q6ZS49 121 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 OR4X2Q8NGF9 303 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 LGALS14Q8TCE9 139 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 RAX2Q96IS3 184 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 KCTD7Q96MP8 289 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 CHCHD6Q9BRQ6 235 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 FBXL15Q9H469 300 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 Q9H521 79 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 PIPOXQ9P0Z9 390 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 DAPK2Q9UIK4 370 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 WSB1Q9Y6I7 421 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 NBR2O15453 112 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 IGLV1-40P01703 118 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 IGLV2-14P01704 120 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 IGLV2-23P01705 113 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 CRYGBP07316 175 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 CD36P16671 472 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 ZBTB25P24278 435 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 SOX6P35712 828 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 PNLIPRP3Q17RR3 467 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 DEFB136Q30KP8 78 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 ZNF260Q3ZCT1 412 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 CDNFQ49AH0 187 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 ASPHD1Q5U4P2 390 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 OR4A4PQ8NGN8 299 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 YIPF6Q96EC8 236 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 RASL11BQ9BPW5 248 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 OR51J1Q9H342 316 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 AURKAIP1Q9NWT8 199 aaPredicted RBP8.31□□□□□ -1.08
CD44-227ENST00000528086 SDHAF2Q9NX18 166 aa8.31□□□□□ -1.08
CD44-227ENST00000528086 TMEM235A6NFC5 223 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 SRRM4A7MD48 611 aaKnown RBP8.3□□□□□ -1.08
CD44-227ENST00000528086 RRHO14718 337 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 PF4V1P10720 104 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 PTHLHP12272 177 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 CRIP2P52943 208 aaPredicted RBP8.3□□□□□ -1.08
CD44-227ENST00000528086 CX3CL1P78423 397 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 MXD1Q05195 221 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 FOXE3Q13461 319 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 PSG5Q15238 335 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 SRSF7Q16629 238 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-227ENST00000528086 KHDC1LQ5JSQ8 128 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 TPRA1Q86W33 373 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 FOXRED2Q8IWF2 684 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 H1FOOQ8IZA3 346 aaPredicted RBP8.3□□□□□ -1.08
CD44-227ENST00000528086 MINDY2Q8NBR6 621 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 KLHL30-AS1Q8NEE0 82 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 NUDCD2Q8WVJ2 157 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 DDB2Q92466 427 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 ATG5Q9H1Y0 275 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 GNB4Q9HAV0 340 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 ZFP57Q9NU63 452 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 MGAT4AQ9UM21 535 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 SSR3Q9UNL2 185 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 NUBP2Q9Y5Y2 271 aa8.3□□□□□ -1.08
CD44-227ENST00000528086 IGKV1D-13A0A0B4J2D9 117 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 LOC100506127A0A0U1RQW1 187 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 OR5H14A6NHG9 310 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 K7EIL1 84 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 ARPC1BO15143 372 aaKnown RBP8.29□□□□□ -1.08
CD44-227ENST00000528086 BET1O15155 118 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 OR8U9P0C7N5 309 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 IGKV1-13P0DP09 117 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 CD33P20138 364 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 CDX1P47902 265 aaPredicted RBP8.29□□□□□ -1.08
CD44-227ENST00000528086 BRWD1-AS2P59051 145 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 PJVKQ0ZLH3 352 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 EIF4EBP1Q13541 118 aaPredicted RBP8.29□□□□□ -1.08
CD44-227ENST00000528086 HACD4Q5VWC8 232 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 TEX38Q6PEX7 206 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 ZNF695Q8IW36 515 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 COMMD1Q8N668 190 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 OR8U1Q8NH10 309 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 CASTOR1Q8WTX7 329 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 WASHC3Q9Y3C0 194 aa8.29□□□□□ -1.08
CD44-227ENST00000528086 WI2-2373I1.2A0A1W2PRP0 233 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 LINC00473A8K010 186 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 I3L521 148 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 M0R1X1 148 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 CCL24O00175 119 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 HSPA12AO43301 675 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 DIRAS3O95661 229 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 ELANEP08246 267 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 SMIM18P0DKX4 95 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 DTYMKP23919 212 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 HOXD3P31249 432 aaPredicted RBP8.28□□□□□ -1.08
CD44-227ENST00000528086 RPS19P39019 145 aaKnown RBP8.28□□□□□ -1.08
CD44-227ENST00000528086 SLC35B1P78383 322 aa8.28□□□□□ -1.08
CD44-227ENST00000528086 EGFEM1PQ0D2K5 195 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms