RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ATP8B1O43520 1251 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 IGKV1-16P04430 117 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 GLAP06280 429 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 LIMS3P0CW19 117 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 LIMS4P0CW20 117 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 RPS16P62249 146 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 SSBP2P81877 361 aaPredicted RBP15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 HMGN3Q15651 99 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 ZNF343Q6P1L6 599 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 BVESQ8NE79 360 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 GHSRQ92847 366 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 FAM46BQ96A09 425 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 Q96M66 194 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 OR14A2Q96R54 314 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 RNF5Q99942 180 aa15.32■□□□□ 0.04
SQSTM1-215ENST00000514093 FAM90A7PA6NKC0 464 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 FAM90A23PA8MXZ1 464 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 PDCD6O75340 191 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 GPX5O75715 221 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 ALPLP05186 524 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 CPEP16870 476 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 PJVKQ0ZLH3 352 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 C6orf141Q5SZD1 244 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 OR2K2Q8NGT1 345 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 ABRACLQ9P1F3 81 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 ORC6Q9Y5N6 252 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 SELENOKQ9Y6D0 94 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 RYR1P21817 5038 aa15.31■□□□□ 0.04
SQSTM1-215ENST00000514093 H3BNX3 289 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 RBMXL2O75526 392 aaKnown RBP15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 OR2A4O95047 310 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 APELAP0DMC3 54 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 AADACP22760 399 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 GUCA2BQ16661 112 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 CCDC58Q4VC31 144 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 OR2G6Q5TZ20 316 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 TSNAXQ99598 290 aaKnown RBP15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 SULT4A1Q9BR01 284 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 OVOL2Q9BRP0 275 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 FAAP24Q9BTP7 215 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 TINAGL1Q9GZM7 467 aaPredicted RBP15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 PEMTQ9UBM1 199 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 CKLFQ9UBR5 152 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 LRRC42Q9Y546 428 aa15.3■□□□□ 0.04
SQSTM1-215ENST00000514093 EI24O14681 340 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 PROP1O75360 226 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 DEDDO75618 318 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 EDN2P20800 178 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 ETV1P50549 477 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 EWSR1Q01844 656 aaKnown RBP eCLIP15.29■□□□□ 0.043e-8■■■□□ 18.8
SQSTM1-215ENST00000514093 LAX1Q8IWV1 398 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 AGMATQ9BSE5 352 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 COA4Q9NYJ1 87 aa15.29■□□□□ 0.04
SQSTM1-215ENST00000514093 HECTD4Q9Y4D8 3996 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 TRBV5-5A0A0J9YX44 114 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 ZNF383Q8NA42 475 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 RHOXF1Q8NHV9 184 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 SETD6Q8TBK2 473 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 SNAPC3Q92966 411 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 Q96MT0 163 aa15.28■□□□□ 0.04
SQSTM1-215ENST00000514093 A0A0B4J203 849 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 NUPR2A6NF83 97 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 OGG1O15527 345 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 SPDEFO95238 335 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 LALBAP00709 142 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 LGALS7P47929 136 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 DEFB114Q30KQ6 69 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 C1orf146Q5VVC0 180 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 C6orf201Q7Z4U5 140 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 DYNLRB2Q8TF09 96 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 SMIM19Q96E16 107 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 USMG5Q96IX5 58 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 C11orf54Q9H0W9 315 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 OR1A1Q9P1Q5 309 aa15.27■□□□□ 0.04
SQSTM1-215ENST00000514093 A0A0J9YWU9 116 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 BMPR1BO00238 502 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 RPS11P62280 158 aaKnown RBP eCLIP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 Q499Y3 187 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 CEMP1Q6PRD7 247 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 SVOPQ8N4V2 548 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 ZFP41Q8N8Y5 198 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 WDR89Q96FK6 387 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 NEDD4LQ96PU5 975 aa15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 CHMP1AQ9HD42 196 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 MRPS18AQ9NVS2 196 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 RPL36Q9Y3U8 105 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-215ENST00000514093 AIREO43918 545 aa15.25■□□□□ 0.03
SQSTM1-215ENST00000514093 CEACAM6P40199 344 aa15.25■□□□□ 0.03
SQSTM1-215ENST00000514093 BABAM2Q9NXR7 383 aa15.25■□□□□ 0.03
SQSTM1-215ENST00000514093 IGLV2-23P01705 113 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 PRH1P02810 166 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 CAPGP40121 348 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 SMN1Q16637 294 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 OR10K2Q6IF99 312 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 TMPRSS11AQ6ZMR5 421 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 PDPNQ86YL7 162 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 TMEM68Q96MH6 324 aa15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 FGF20Q9NP95 211 aaPredicted RBP15.24■□□□□ 0.03
SQSTM1-215ENST00000514093 TRBV5-7A0A0A0MS05 114 aa15.23■□□□□ 0.03
SQSTM1-215ENST00000514093 APOA2P02652 100 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms