RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SOX21Q9Y651 276 aaPredicted RBP15.72■□□□□ 0.11
USP39-218ENST00000493829 GPR31O00270 319 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 CTSDP07339 412 aaPredicted RBP15.71■□□□□ 0.11
USP39-218ENST00000493829 AKR1C4P17516 323 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 HTR1DP28221 377 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 PIGPP57054 158 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 SURF2Q15527 256 aaPredicted RBP15.71■□□□□ 0.11
USP39-218ENST00000493829 LPCAT3Q6P1A2 487 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 CCBE1Q6UXH8 406 aaPredicted RBP15.71■□□□□ 0.11
USP39-218ENST00000493829 CENPSQ8N2Z9 138 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 ZDHHC22Q8N966 263 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 TMUB1Q9BVT8 246 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 COPZ2Q9P299 210 aa15.71■□□□□ 0.11
USP39-218ENST00000493829 SVEP1Q4LDE5 3571 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 LY6G6DO95868 133 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 H2AFB2P0C5Z0 115 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 EPHA1P21709 976 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 OR2B11Q5JQS5 317 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 GLDNQ6ZMI3 551 aaPredicted RBP15.7■□□□□ 0.1
USP39-218ENST00000493829 OR51H1Q8NH63 302 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 RPEQ96AT9 228 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 SCGB3A2Q96PL1 93 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 ZNF251Q9BRH9 671 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 MRPL20Q9BYC9 149 aaKnown RBP15.7■□□□□ 0.1
USP39-218ENST00000493829 PROP1O75360 226 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 ZNF833PQ6ZTB9 187 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 Q71RC1 249 aaPredicted RBP15.7■□□□□ 0.1
USP39-218ENST00000493829 CMTM1Q8IZ96 169 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 DUSP18Q8NEJ0 188 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 CAPSLQ8WWF8 208 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 C22orf15Q8WYQ4 148 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 TMEM230Q96A57 120 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 S1PR3Q99500 378 aa15.7■□□□□ 0.1
USP39-218ENST00000493829 A8MV72 311 aaPredicted RBP15.69■□□□□ 0.1
USP39-218ENST00000493829 LEUTXA8MZ59 168 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 OXA1LQ15070 435 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 SSX2Q16385 188 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 FAM120AOSQ5T036 256 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 TPTE2P1Q5T6R2 138 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 TBC1D26Q86UD7 250 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 TGIF2LXQ8IUE1 241 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 DYNAPQ8N1N2 210 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 BVESQ8NE79 360 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 FAM216AQ8WUB2 273 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 DPM3Q9P2X0 92 aa15.69■□□□□ 0.1
USP39-218ENST00000493829 CSPG4Q6UVK1 2322 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 A0A0U1RQK1 487 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 PGLYRP1O75594 196 aaPredicted RBP15.68■□□□□ 0.1
USP39-218ENST00000493829 CEACAM3P40198 252 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 RPL30P62888 115 aaKnown RBP15.68■□□□□ 0.1
USP39-218ENST00000493829 MIDNQ504T8 468 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 CLEC9AQ6UXN8 241 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.68■□□□□ 0.1
USP39-218ENST00000493829 NANPQ8TBE9 248 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 TCTEX1D2Q8WW35 142 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 RTN4IP1Q8WWV3 396 aaPredicted RBP15.68■□□□□ 0.1
USP39-218ENST00000493829 ST6GALNAC6Q969X2 333 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 ZNF486Q96H40 463 aaPredicted RBP15.68■□□□□ 0.1
USP39-218ENST00000493829 AKR1E2Q96JD6 320 aa15.68■□□□□ 0.1
USP39-218ENST00000493829 TEX13DA0A0J9YY54 714 aaPredicted RBP15.67■□□□□ 0.1
USP39-218ENST00000493829 LINC00473A8K010 186 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 LY6LH3BQJ8 138 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 SLC22A5O76082 557 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 VSIG10L2P0DP72 767 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 ZNF137PP52743 207 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 KCTD9Q7L273 389 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 CCDC71LQ8N9Z2 235 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 CHPT1Q8WUD6 406 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 GSX1Q9H4S2 264 aaPredicted RBP15.67■□□□□ 0.1
USP39-218ENST00000493829 TBL2Q9Y4P3 447 aaKnown RBP15.67■□□□□ 0.1
USP39-218ENST00000493829 TLN2Q9Y4G6 2542 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 IGHV3-72A0A0B4J1Y9 119 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 INMT-MINDY4F8WBC2 141 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 VAMP1P23763 118 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 S100GP29377 79 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 C4orf46Q504U0 113 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 MINOS1Q5TGZ0 78 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 MOB3BQ86TA1 216 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 AJUBAQ96IF1 538 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 PRR13Q9NZ81 148 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 NUP50Q9UKX7 468 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 MINOS1-NBL1R4GNA1 71 aa15.67■□□□□ 0.1
USP39-218ENST00000493829 MPPED1O15442 326 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 PEX14O75381 377 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 FSHBP01225 129 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 CT45A6P0DMU7 189 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 CT45A5P0DMU8 189 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 CT45A7P0DMV0 189 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 DUTP33316 252 aaKnown RBP15.66■□□□□ 0.1
USP39-218ENST00000493829 PPP1R1AQ13522 171 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 EIF4EBP1Q13541 118 aaPredicted RBP15.66■□□□□ 0.1
USP39-218ENST00000493829 BCL6BQ8N143 479 aaPredicted RBP15.66■□□□□ 0.1
USP39-218ENST00000493829 ZNF383Q8NA42 475 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 ZBTB34Q8NCN2 500 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 OR52B4Q8NGK2 314 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 SEC22CQ9BRL7 303 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 MS4A7Q9GZW8 240 aaPredicted RBP15.66■□□□□ 0.1
USP39-218ENST00000493829 GHITMQ9H3K2 345 aa15.66■□□□□ 0.1
USP39-218ENST00000493829 IGHV1-3A0A0C4DH29 117 aa15.65■□□□□ 0.1
USP39-218ENST00000493829 MDFIC2A0A1B0GVS7 189 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms