RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLC38A11Q08AI6 406 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 FAM27E3Q08E93 113 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 ADIRFQ15847 76 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 SPSB3Q6PJ21 355 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 Q6ZT83 130 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 SLC39A9Q9NUM3 307 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 IGLV2-14P01704 120 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 PGA5P0DJD9 388 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 ZNF718Q3SXZ3 478 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 ZNF497Q6ZNH5 498 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 RIMS4Q9H426 269 aaPredicted RBP11.24□□□□□ -0.61
VPS54-203ENST00000409558 RBKSQ9H477 322 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 STRAPQ9Y3F4 350 aaKnown RBP11.24□□□□□ -0.61
VPS54-203ENST00000409558 CYB5BO43169 146 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 IFNA10P01566 189 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 WDR25Q64LD2 544 aaPredicted RBP11.23□□□□□ -0.61
VPS54-203ENST00000409558 COQ2Q96H96 371 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 NIPSNAP3BQ9BS92 247 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 LIN7CQ9NUP9 197 aaKnown RBP11.23□□□□□ -0.61
VPS54-203ENST00000409558 PTPRQQ9UMZ3 2332 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 CRYAAP02489 173 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 TLE4Q04727 773 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 TRAV17A0A0B4J275 112 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 FAM157AC9JC47 383 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 MYOD1P15172 320 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 TFF3Q07654 80 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 MSMPQ1L6U9 139 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 NRN1LQ496H8 165 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 WDR82Q6UXN9 313 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 HAPLN4Q86UW8 402 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 S100PBPQ96BU1 408 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 ZDHHC11Q9H8X9 412 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 RNF115Q9Y4L5 304 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 ASH1LQ9NR48 2969 aaKnown RBP11.23□□□□□ -0.61
VPS54-203ENST00000409558 SPG11Q96JI7 2443 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 ODAMA1E959 279 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 LINC00473A8K010 186 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 NUDT19A8MXV4 375 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 RAB5AP20339 215 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 CCL8P80075 99 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 SAXO1Q8IYX7 474 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 OR8G5Q8NG78 346 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 SARAFQ96BY9 339 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 OR2V2Q96R30 315 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 PATZ1Q9HBE1 687 aaKnown RBP11.23□□□□□ -0.61
VPS54-203ENST00000409558 NIT2Q9NQR4 276 aa11.23□□□□□ -0.61
VPS54-203ENST00000409558 TNRC6BQ9UPQ9 1833 aaKnown RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 SCAF4O95104 1147 aaKnown RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 FGF7P21781 194 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 TAS2R30P59541 319 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 RPS23P62266 143 aaKnown RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 ZNF295-AS1Q8N0V1 137 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 WDR31Q8NA23 367 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 GNPNAT1Q96EK6 184 aaPredicted RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 OPA3Q9H6K4 179 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 CYB5R3P00387 301 aaPredicted RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 S100A9P06702 114 aaKnown RBP11.22□□□□□ -0.61
VPS54-203ENST00000409558 GPR12P47775 334 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 NCR3LG1Q68D85 454 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 C5orf30Q96GV9 206 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 PKIBQ9C010 78 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 GP6Q9HCN6 339 aa11.22□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A10PA6NDY2 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A18PA6NE21 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A16PA6NEW6 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A20PA6NIJ5 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A8PA6NJQ4 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A7PA6NKC0 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A22PA8MWA6 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A12PA8MX19 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A5PA8MXJ8 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A23PA8MXZ1 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A15PP0C7V4 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A13PP0C7W8 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A14PP0C7W9 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 FAM90A24PP0C7X0 464 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 CST9LP1Q5W188 147 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 IGHV1-18A0A0C4DH31 117 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 MAP1LC3B2A6NCE7 125 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 PRDX2P32119 198 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 RTP5Q14D33 572 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 PRAMEF5Q5TYX0 476 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 C22orf34Q6ZV56 151 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 SSX3Q99909 188 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 MAP1LC3BQ9GZQ8 125 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 HEYLQ9NQ87 328 aaPredicted RBP11.21□□□□□ -0.61
VPS54-203ENST00000409558 GFOD1Q9NXC2 390 aa11.21□□□□□ -0.61
VPS54-203ENST00000409558 HBG1P69891 147 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 HBG2P69892 147 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 ICAM4Q14773 271 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 WFDC8Q8IUA0 241 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 CD177Q8N6Q3 437 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 ITLN1Q8WWA0 313 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 RND1Q92730 232 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 RCC1LQ96I51 464 aaKnown RBP11.21□□□□□ -0.62
VPS54-203ENST00000409558 ATPIF1Q9UII2 106 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 TRAV38-1A0A0B4J264 116 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 IGHV2OR16-5A0A0B4J2B6 119 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 A0A1B0GU03 582 aa11.21□□□□□ -0.62
VPS54-203ENST00000409558 ACP7Q6ZNF0 438 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms