RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 BET1O15155 118 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 NDUFA3O95167 84 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 DUS4LO95620 317 aaKnown RBP13.22□□□□□ -0.29
HMGN4-201ENST00000377575 ELANEP08246 267 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 CNTFRP26992 372 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 SRSF7Q16629 238 aaKnown RBP eCLIP13.22□□□□□ -0.29
HMGN4-201ENST00000377575 C5orf64Q2M2E5 130 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 GLDNQ6ZMI3 551 aaPredicted RBP13.22□□□□□ -0.29
HMGN4-201ENST00000377575 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.22□□□□□ -0.29
HMGN4-201ENST00000377575 RITA1Q96K30 269 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 TOLLIPQ9H0E2 274 aa13.22□□□□□ -0.29
HMGN4-201ENST00000377575 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.22□□□□□ -0.29
HMGN4-201ENST00000377575 APOA2P02652 100 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 TFAP2AP05549 437 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 GSTP1P09211 210 aaKnown RBP13.21□□□□□ -0.29
HMGN4-201ENST00000377575 CD36P16671 472 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 SDC2P34741 201 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 CFHR3Q02985 330 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 PLGLAQ15195 96 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 C8orf86Q6ZUL3 223 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 ZNF695Q8IW36 515 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 RNF152Q8N8N0 203 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 OR5AN1Q8NGI8 311 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 LGALS14Q8TCE9 139 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 RNF5Q99942 180 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 GINS4Q9BRT9 223 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 OR51J1Q9H342 316 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 VCX3AQ9NNX9 186 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 PARP11Q9NR21 331 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 ZNF230Q9UIE0 474 aaPredicted RBP13.21□□□□□ -0.29
HMGN4-201ENST00000377575 RNF150Q9ULK6 438 aa13.21□□□□□ -0.29
HMGN4-201ENST00000377575 TRBV6-7A0A0A0MS04 114 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 IGHG4P01861 327 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 RPLP1P05386 114 aaKnown RBP13.2□□□□□ -0.3
HMGN4-201ENST00000377575 GSTT2P0CG29 244 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 GSTT2BP0CG30 244 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 SNRPBP14678 240 aaKnown RBP13.2□□□□□ -0.3
HMGN4-201ENST00000377575 IGLL1P15814 213 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 DTYMKP23919 212 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 THBS3P49746 956 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 SCAND1P57086 179 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 MXD1Q05195 221 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 TIMM50Q3ZCQ8 353 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 IGSF11Q5DX21 431 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 LIN54Q6MZP7 749 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 ETV3LQ6ZN32 361 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 Q6ZS49 121 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 LINC00482Q8N8I6 264 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 MAFIPQ8WZ33 124 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 GPR61Q9BZJ8 451 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 OR2D2Q9H210 308 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 NECAP2Q9NVZ3 263 aa13.2□□□□□ -0.3
HMGN4-201ENST00000377575 TGP01266 2768 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 IGHV7-81A0A0B4J1V7 117 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 RRHO14718 337 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 ATP6V0E1O15342 81 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 TNFAIP8O95379 198 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 MYCNOSP40205 109 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 PITPNAQ00169 270 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 CDNFQ49AH0 187 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 HACD4Q5VWC8 232 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 C18orf65Q6ZTR6 163 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 PDPNQ86YL7 162 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 DRAXINQ8NBI3 349 aaPredicted RBP13.19□□□□□ -0.3
HMGN4-201ENST00000377575 RBM7Q9Y580 266 aaKnown RBP13.19□□□□□ -0.3
HMGN4-201ENST00000377575 ETV7Q9Y603 341 aa13.19□□□□□ -0.3
HMGN4-201ENST00000377575 M0R1X1 148 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 SPDEFO95238 335 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 OR8U9P0C7N5 309 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 PSMB8P28062 276 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 MRPL41Q8IXM3 137 aaKnown RBP13.18□□□□□ -0.3
HMGN4-201ENST00000377575 ZNF383Q8NA42 475 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 OR8U1Q8NH10 309 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 TSNAXQ99598 290 aaKnown RBP13.18□□□□□ -0.3
HMGN4-201ENST00000377575 DCSTAMPQ9H295 470 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 FBXL15Q9H469 300 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 RNF167Q9H6Y7 350 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 RHBDL2Q9NX52 303 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 GAB2Q9UQC2 676 aa13.18□□□□□ -0.3
HMGN4-201ENST00000377575 A0A087WXM4 84 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 TRAV41A0A0B4J266 112 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 TMEM235A6NFC5 223 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 TMEM127O75204 238 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 CDX1P47902 265 aaPredicted RBP13.17□□□□□ -0.3
HMGN4-201ENST00000377575 GNG2P59768 71 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 CBX3Q13185 183 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 IDNKQ5T6J7 187 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 FOXB2Q5VYV0 432 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 ZNF660Q6AZW8 331 aaPredicted RBP13.17□□□□□ -0.3
HMGN4-201ENST00000377575 TMEM65Q6PI78 240 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 LCNL1Q6ZST4 164 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 TSPAN14Q8NG11 270 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 MCRIP2Q9BUT9 160 aaKnown RBP13.17□□□□□ -0.3
HMGN4-201ENST00000377575 SDHAF2Q9NX18 166 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 ELF5Q9UKW6 265 aaPredicted RBP13.17□□□□□ -0.3
HMGN4-201ENST00000377575 WSB1Q9Y6I7 421 aa13.17□□□□□ -0.3
HMGN4-201ENST00000377575 DNAH3Q8TD57 4116 aa13.16□□□□□ -0.3
HMGN4-201ENST00000377575 G3V318 75 aa13.16□□□□□ -0.3
HMGN4-201ENST00000377575 PROP1O75360 226 aa13.16□□□□□ -0.3
HMGN4-201ENST00000377575 PRB2P02812 416 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms